RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 COL10A1Q03692 680 aa4.88□□□□□ -1.63
CD44-219ENST00000525685 TIGD2Q4W5G0 525 aa4.88□□□□□ -1.63
CD44-219ENST00000525685 ATXN7L2Q5T6C5 722 aaPredicted RBP4.88□□□□□ -1.63
CD44-219ENST00000525685 ZNF529Q6P280 563 aa4.88□□□□□ -1.63
CD44-219ENST00000525685 SLC4A10Q6U841 1118 aa4.88□□□□□ -1.63
CD44-219ENST00000525685 EPM2AIP1Q7L775 607 aaPredicted RBP4.88□□□□□ -1.63
CD44-219ENST00000525685 GDF7Q7Z4P5 450 aa4.88□□□□□ -1.63
CD44-219ENST00000525685 VRK3Q8IV63 474 aa4.88□□□□□ -1.63
CD44-219ENST00000525685 CCAR1Q8IX12 1150 aaKnown RBP4.88□□□□□ -1.63
CD44-219ENST00000525685 ZGPATQ8N5A5 531 aaKnown RBP4.88□□□□□ -1.63
CD44-219ENST00000525685 AOPEPQ8N6M6 819 aa4.88□□□□□ -1.63
CD44-219ENST00000525685 TTC8Q8TAM2 541 aa4.88□□□□□ -1.63
CD44-219ENST00000525685 CASKIN2Q8WXE0 1202 aa4.88□□□□□ -1.63
CD44-219ENST00000525685 HOXB13Q92826 284 aaPredicted RBP4.88□□□□□ -1.63
CD44-219ENST00000525685 MTFMTQ96DP5 389 aaKnown RBP4.88□□□□□ -1.63
CD44-219ENST00000525685 DCLRE1CQ96SD1 692 aaKnown RBP4.88□□□□□ -1.63
CD44-219ENST00000525685 ATP10BO94823 1461 aa4.88□□□□□ -1.63
CD44-219ENST00000525685 EPRSP07814 1512 aaKnown RBP4.87□□□□□ -1.63
CD44-219ENST00000525685 CDK13Q14004 1512 aaKnown RBP4.87□□□□□ -1.63
CD44-219ENST00000525685 MAP3K4Q9Y6R4 1608 aa4.87□□□□□ -1.63
CD44-219ENST00000525685 PPRC1Q5VV67 1664 aaKnown RBP4.87□□□□□ -1.63
CD44-219ENST00000525685 CXorf49A8MYA2 514 aaPredicted RBP4.87□□□□□ -1.63
CD44-219ENST00000525685 AMY1AP04745 511 aa4.87□□□□□ -1.63
CD44-219ENST00000525685 MTHFD1P11586 935 aaKnown RBP4.87□□□□□ -1.63
CD44-219ENST00000525685 ALAS1P13196 640 aa4.87□□□□□ -1.63
CD44-219ENST00000525685 ALOX15P16050 662 aaPredicted RBP4.87□□□□□ -1.63
CD44-219ENST00000525685 LAG3P18627 525 aa4.87□□□□□ -1.63
CD44-219ENST00000525685 PROZP22891 400 aa4.87□□□□□ -1.63
CD44-219ENST00000525685 MGAT1P26572 445 aa4.87□□□□□ -1.63
CD44-219ENST00000525685 PCSK1P29120 753 aa4.87□□□□□ -1.63
CD44-219ENST00000525685 ZNF280AP59817 542 aaPredicted RBP4.87□□□□□ -1.63
CD44-219ENST00000525685 CTXN1P60606 82 aa4.87□□□□□ -1.63
CD44-219ENST00000525685 TARDBPQ13148 414 aaKnown RBP eCLIP4.87□□□□□ -1.63
CD44-219ENST00000525685 ATAT1Q5SQI0 421 aa4.87□□□□□ -1.63
CD44-219ENST00000525685 KCNV1Q6PIU1 500 aa4.87□□□□□ -1.63
CD44-219ENST00000525685 NOL8Q76FK4 1167 aaKnown RBP4.87□□□□□ -1.63
CD44-219ENST00000525685 UBE3BQ7Z3V4 1068 aa4.87□□□□□ -1.63
CD44-219ENST00000525685 DAAM2Q86T65 1068 aa4.87□□□□□ -1.63
CD44-219ENST00000525685 DENND1CQ8IV53 801 aa4.87□□□□□ -1.63
CD44-219ENST00000525685 PRR18Q8N4B5 295 aa4.87□□□□□ -1.63
CD44-219ENST00000525685 RNF169Q8NCN4 708 aa4.87□□□□□ -1.63
CD44-219ENST00000525685 OR10H5Q8NGA6 315 aa4.87□□□□□ -1.63
CD44-219ENST00000525685 DIS3LQ8TF46 1054 aaKnown RBP4.87□□□□□ -1.63
CD44-219ENST00000525685 MYEOVQ96EZ4 313 aa4.87□□□□□ -1.63
CD44-219ENST00000525685 CDK5RAP3Q96JB5 506 aa4.87□□□□□ -1.63
CD44-219ENST00000525685 REXO4Q9GZR2 422 aaKnown RBP4.87□□□□□ -1.63
CD44-219ENST00000525685 C11orf54Q9H0W9 315 aaPredicted RBP4.87□□□□□ -1.63
CD44-219ENST00000525685 FAM204AQ9H8W3 233 aa4.87□□□□□ -1.63
CD44-219ENST00000525685 SLAMF7Q9NQ25 335 aa4.87□□□□□ -1.63
CD44-219ENST00000525685 ANLNQ9NQW6 1124 aa4.87□□□□□ -1.63
CD44-219ENST00000525685 CNNM1Q9NRU3 951 aa4.87□□□□□ -1.63
CD44-219ENST00000525685 C1orf112Q9NSG2 853 aa4.87□□□□□ -1.63
CD44-219ENST00000525685 LMBRD1Q9NUN5 540 aa4.87□□□□□ -1.63
CD44-219ENST00000525685 GNL3LQ9NVN8 582 aaKnown RBP4.87□□□□□ -1.63
CD44-219ENST00000525685 TRPM5Q9NZQ8 1165 aa4.87□□□□□ -1.63
CD44-219ENST00000525685 CALCOCO1Q9P1Z2 691 aa4.87□□□□□ -1.63
CD44-219ENST00000525685 FEZ2Q9UHY8 353 aaPredicted RBP4.87□□□□□ -1.63
CD44-219ENST00000525685 NR2E3Q9Y5X4 410 aa4.87□□□□□ -1.63
CD44-219ENST00000525685 CASKIN1Q8WXD9 1431 aa4.87□□□□□ -1.63
CD44-219ENST00000525685 CENPVL1A0A0U1RR11 272 aa4.86□□□□□ -1.63
CD44-219ENST00000525685 TCRBV7S2A1N4TA0A589 114 aa4.86□□□□□ -1.63
CD44-219ENST00000525685 GRID2IPA4D2P6 1211 aa4.86□□□□□ -1.63
CD44-219ENST00000525685 LRRC14BA6NHZ5 514 aa4.86□□□□□ -1.63
CD44-219ENST00000525685 TMEM200CA6NKL6 621 aa4.86□□□□□ -1.63
CD44-219ENST00000525685 KIF3BO15066 747 aa4.86□□□□□ -1.63
CD44-219ENST00000525685 PJA2O43164 708 aa4.86□□□□□ -1.63
CD44-219ENST00000525685 LPXNO60711 386 aa4.86□□□□□ -1.63
CD44-219ENST00000525685 GCP02774 474 aa4.86□□□□□ -1.63
CD44-219ENST00000525685 GUCY1A2P33402 732 aa4.86□□□□□ -1.63
CD44-219ENST00000525685 FXR1P51114 621 aaKnown RBP eCLIP4.86□□□□□ -1.63
CD44-219ENST00000525685 RNASE9P60153 205 aaKnown RBP4.86□□□□□ -1.63
CD44-219ENST00000525685 NHLH2Q02577 135 aa4.86□□□□□ -1.63
CD44-219ENST00000525685 FSTL1Q12841 308 aa4.86□□□□□ -1.63
CD44-219ENST00000525685 MTM1Q13496 603 aa4.86□□□□□ -1.63
CD44-219ENST00000525685 PTPAQ15257 358 aa4.86□□□□□ -1.63
CD44-219ENST00000525685 BMT2Q1RMZ1 405 aa4.86□□□□□ -1.63
CD44-219ENST00000525685 CCDC181Q5TID7 509 aa4.86□□□□□ -1.63
CD44-219ENST00000525685 HEATR3Q7Z4Q2 680 aa4.86□□□□□ -1.63
CD44-219ENST00000525685 ZBTB34Q8NCN2 500 aa4.86□□□□□ -1.63
CD44-219ENST00000525685 NLGN4YQ8NFZ3 816 aaPredicted RBP4.86□□□□□ -1.63
CD44-219ENST00000525685 SLC35B2Q8TB61 432 aa4.86□□□□□ -1.63
CD44-219ENST00000525685 IFI44Q8TCB0 444 aa4.86□□□□□ -1.63
CD44-219ENST00000525685 NSUN6Q8TEA1 469 aaKnown RBP4.86□□□□□ -1.63
CD44-219ENST00000525685 CGRRF1Q99675 332 aa4.86□□□□□ -1.63
CD44-219ENST00000525685 ACO2Q99798 780 aaKnown RBP4.86□□□□□ -1.63
CD44-219ENST00000525685 MYOCQ99972 504 aa4.86□□□□□ -1.63
CD44-219ENST00000525685 PACSIN1Q9BY11 444 aa4.86□□□□□ -1.63
CD44-219ENST00000525685 ARMT1Q9H993 441 aa4.86□□□□□ -1.63
CD44-219ENST00000525685 AKIP1Q9NQ31 210 aa4.86□□□□□ -1.63
CD44-219ENST00000525685 PRDM11Q9NQV5 511 aa4.86□□□□□ -1.63
CD44-219ENST00000525685 DKK2Q9UBU2 259 aa4.86□□□□□ -1.63
CD44-219ENST00000525685 ABCF2Q9UG63 623 aa4.86□□□□□ -1.63
CD44-219ENST00000525685 FRMPD2Q68DX3 1309 aaPredicted RBP4.86□□□□□ -1.63
CD44-219ENST00000525685 FYCO1Q9BQS8 1478 aa4.86□□□□□ -1.63
CD44-219ENST00000525685 CFAP43Q8NDM7 1665 aa4.86□□□□□ -1.63
CD44-219ENST00000525685 GAGE12BA1L429 117 aa4.85□□□□□ -1.63
CD44-219ENST00000525685 GAGE12HA6NDE8 117 aa4.85□□□□□ -1.63
CD44-219ENST00000525685 DIRC3C9JPN6 131 aa4.85□□□□□ -1.63
CD44-219ENST00000525685 RNASET2O00584 256 aaKnown RBP4.85□□□□□ -1.63
CD44-219ENST00000525685 NCR1O76036 304 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms