RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 TMEM60Q9H2L4 133 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 RXFP1Q9HBX9 757 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 BLOC1S4Q9NUP1 217 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 DZANK1Q9NVP4 752 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 CNTN3Q9P232 1028 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 DUSP12Q9UNI6 340 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 C2CD2Q9Y426 696 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 CDY2AQ9Y6F7 541 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 NF1P21359 2839 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 MYH11P35749 1972 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 ARHGEF35A5YM69 484 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 FAM181BA6NEQ2 426 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 SLC16A3O15427 465 aaKnown RBP3.1□□□□□ -1.91
MCF2-208ENST00000519895 STX10O60499 249 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 NBNO60934 754 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 MED24O75448 989 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 RHOBTB3O94955 611 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 CLSTN1O94985 981 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 LETM1O95202 739 aaPredicted RBP3.1□□□□□ -1.91
MCF2-208ENST00000519895 GJB5O95377 273 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 LINC00271P0C7V0 271 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 ACRP10323 421 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 TYMPP19971 482 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 CCT6AP40227 531 aaKnown RBP3.1□□□□□ -1.91
MCF2-208ENST00000519895 GRIK3Q13003 919 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 BMS1Q14692 1282 aaKnown RBP3.1□□□□□ -1.91
MCF2-208ENST00000519895 IL17AQ16552 155 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 UBXN11Q5T124 520 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 ZNF618Q5T7W0 954 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 EFCAB12Q6NXP0 572 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 SLC27A1Q6PCB7 646 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 SV2BQ7L1I2 683 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 ECHDC2Q86YB7 292 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 CCDC65Q8IXS2 484 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 LRRC43Q8N309 656 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 ENGASEQ8NFI3 743 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 LEO1Q8WVC0 666 aaPredicted RBP3.1□□□□□ -1.91
MCF2-208ENST00000519895 LARP4BQ92615 738 aaKnown RBP3.1□□□□□ -1.91
MCF2-208ENST00000519895 COPS5Q92905 334 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 IQCDQ96DY2 449 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 SPACA7Q96KW9 195 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 FIZ1Q96SL8 496 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 MRPL4Q9BYD3 311 aaKnown RBP3.1□□□□□ -1.91
MCF2-208ENST00000519895 DNAI2Q9GZS0 605 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 BCL11AQ9H165 835 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 IFT122Q9HBG6 1241 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 RNF19AQ9NV58 838 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 SUCLA2Q9P2R7 463 aaPredicted RBP3.1□□□□□ -1.91
MCF2-208ENST00000519895 ISY1Q9ULR0 285 aaKnown RBP3.1□□□□□ -1.91
MCF2-208ENST00000519895 TRAF3IP3Q9Y228 551 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 PCDHB6Q9Y5E3 794 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 ZFP37Q9Y6Q3 630 aaPredicted RBP3.1□□□□□ -1.91
MCF2-208ENST00000519895 ADGRA3Q8IWK6 1321 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 IGF2RP11717 2491 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 DDX11L8A8MPP1 907 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 ARHGAP33O14559 1287 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 SCAMP3O14828 347 aaKnown RBP3.1□□□□□ -1.91
MCF2-208ENST00000519895 SYN3O14994 580 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 B4GALT3O60512 393 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 ARHGEF15O94989 841 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 FGF19O95750 216 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 CYP11A1P05108 521 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 PLA2G4BP0C869 781 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 DRD2P14416 443 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 GLRA2P23416 452 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 UBA7P41226 1012 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 PNPLA4P41247 253 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 KCNJ6P48051 423 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 BEX3Q00994 111 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 LAMTOR4Q0VGL1 99 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 STK3Q13188 491 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 ADGRD1Q6QNK2 874 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 DDX53Q86TM3 631 aaKnown RBP3.1□□□□□ -1.91
MCF2-208ENST00000519895 FAM228AQ86W67 206 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 SCML4Q8N228 414 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 DEPDC4Q8N2C3 294 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 LEMD2Q8NC56 503 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 SNX29Q8TEQ0 813 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 DNAJC19Q96DA6 116 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 CEP170P1Q96L14 293 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 AIFM3Q96NN9 605 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 ACCSQ96QU6 501 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 TMX1Q9H3N1 280 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 NGRNQ9NPE2 291 aaKnown RBP3.1□□□□□ -1.91
MCF2-208ENST00000519895 DDX19AQ9NUU7 478 aaKnown RBP3.1□□□□□ -1.91
MCF2-208ENST00000519895 DMAC2Q9NW81 257 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 KLK13Q9UKR3 277 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 BACE2Q9Y5Z0 518 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 ANK1P16157 1881 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 CLUHO75153 1309 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 UMODL1Q5DID0 1318 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 RALGAPA1Q6GYQ0 2036 aa3.1□□□□□ -1.91
MCF2-208ENST00000519895 LINC01553A4QN01 128 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 PDXKO00764 312 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 BACH1O14867 736 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 HRO43593 1189 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 PQBP1O60828 265 aaKnown RBP3.09□□□□□ -1.91
MCF2-208ENST00000519895 RPS6KA5O75582 802 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 TOM1L1O75674 476 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 GNA14O95837 355 aa3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms