RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 MAGEB10Q96LZ2 347 aaPredicted RBP6.28□□□□□ -1.4
NUP54-218ENST00000515460 ZNF341Q9BYN7 854 aa6.28□□□□□ -1.4
NUP54-218ENST00000515460 PANK2Q9BZ23 570 aa6.28□□□□□ -1.4
NUP54-218ENST00000515460 OSBPL2Q9H1P3 480 aa6.28□□□□□ -1.4
NUP54-218ENST00000515460 SEC61A2Q9H9S3 476 aa6.28□□□□□ -1.4
NUP54-218ENST00000515460 MYOZ2Q9NPC6 264 aa6.28□□□□□ -1.4
NUP54-218ENST00000515460 GGA3Q9NZ52 723 aa6.28□□□□□ -1.4
NUP54-218ENST00000515460 CBLCQ9ULV8 474 aa6.28□□□□□ -1.4
NUP54-218ENST00000515460 NOL7Q9UMY1 257 aaKnown RBP6.28□□□□□ -1.4
NUP54-218ENST00000515460 SMC3Q9UQE7 1217 aa6.28□□□□□ -1.4
NUP54-218ENST00000515460 RIPOR2Q9Y4F9 1068 aa6.28□□□□□ -1.4
NUP54-218ENST00000515460 SLC4A7Q9Y6M7 1214 aa6.28□□□□□ -1.4
NUP54-218ENST00000515460 FAM186AA6NE01 2351 aa6.28□□□□□ -1.4
NUP54-218ENST00000515460 SPTBN2O15020 2390 aa6.28□□□□□ -1.4
NUP54-218ENST00000515460 MYBBP1AQ9BQG0 1328 aaKnown RBP6.27□□□□□ -1.41
NUP54-218ENST00000515460 HMGB1P1B2RPK0 211 aaPredicted RBP6.27□□□□□ -1.41
NUP54-218ENST00000515460 ZNF561-AS1K7EIQ3 104 aa6.27□□□□□ -1.41
NUP54-218ENST00000515460 CYR61O00622 381 aa6.27□□□□□ -1.41
NUP54-218ENST00000515460 MAN2B1O00754 1011 aa6.27□□□□□ -1.41
NUP54-218ENST00000515460 APAF1O14727 1248 aa6.27□□□□□ -1.41
NUP54-218ENST00000515460 CLASP2O75122 1294 aaKnown RBP6.27□□□□□ -1.41
NUP54-218ENST00000515460 SGPL1O95470 568 aa6.27□□□□□ -1.41
NUP54-218ENST00000515460 AMY2AP04746 511 aa6.27□□□□□ -1.41
NUP54-218ENST00000515460 IGKV5-2P06315 115 aa6.27□□□□□ -1.41
NUP54-218ENST00000515460 TPM3P06753 285 aa6.27□□□□□ -1.41
NUP54-218ENST00000515460 AMY2BP19961 511 aa6.27□□□□□ -1.41
NUP54-218ENST00000515460 CD151P48509 253 aa6.27□□□□□ -1.41
NUP54-218ENST00000515460 WDR43Q15061 677 aaKnown RBP eCLIP6.27□□□□□ -1.41
NUP54-218ENST00000515460 ZNF568Q3ZCX4 644 aa6.27□□□□□ -1.41
NUP54-218ENST00000515460 CCDC152Q4G0S7 254 aa6.27□□□□□ -1.41
NUP54-218ENST00000515460 C2orf27AQ580R0 203 aa6.27□□□□□ -1.41
NUP54-218ENST00000515460 TRIM61Q5EBN2 209 aa6.27□□□□□ -1.41
NUP54-218ENST00000515460 GSTCDQ8NEC7 633 aa6.27□□□□□ -1.41
NUP54-218ENST00000515460 PRSS33Q8NF86 280 aa6.27□□□□□ -1.41
NUP54-218ENST00000515460 ADOQ96SZ5 270 aa6.27□□□□□ -1.41
NUP54-218ENST00000515460 MXD3Q9BW11 206 aa6.27□□□□□ -1.41
NUP54-218ENST00000515460 MRPL4Q9BYD3 311 aaKnown RBP6.27□□□□□ -1.41
NUP54-218ENST00000515460 SEMA4AQ9H3S1 761 aa6.27□□□□□ -1.41
NUP54-218ENST00000515460 IFT57Q9NWB7 429 aa6.27□□□□□ -1.41
NUP54-218ENST00000515460 CWC25Q9NXE8 425 aaPredicted RBP6.27□□□□□ -1.41
NUP54-218ENST00000515460 ZFR2Q9UPR6 939 aaKnown RBP6.27□□□□□ -1.41
NUP54-218ENST00000515460 WDR87Q6ZQQ6 2873 aa6.27□□□□□ -1.41
NUP54-218ENST00000515460 DMXL1Q9Y485 3027 aa6.26□□□□□ -1.41
NUP54-218ENST00000515460 ESYT3A0FGR9 886 aa6.26□□□□□ -1.41
NUP54-218ENST00000515460 CCDC189A1A4V9 331 aa6.26□□□□□ -1.41
NUP54-218ENST00000515460 PRAMEF25A6NGN4 478 aa6.26□□□□□ -1.41
NUP54-218ENST00000515460 FAM90A27PA6NNH2 459 aa6.26□□□□□ -1.41
NUP54-218ENST00000515460 H0YHG0 523 aa6.26□□□□□ -1.41
NUP54-218ENST00000515460 CCP110O43303 1012 aa6.26□□□□□ -1.41
NUP54-218ENST00000515460 CUTAO60888 179 aa6.26□□□□□ -1.41
NUP54-218ENST00000515460 SCP2P22307 547 aa6.26□□□□□ -1.41
NUP54-218ENST00000515460 JAM2P57087 298 aa6.26□□□□□ -1.41
NUP54-218ENST00000515460 HERVK_113P62684 666 aa6.26□□□□□ -1.41
NUP54-218ENST00000515460 GNAI1P63096 354 aa6.26□□□□□ -1.41
NUP54-218ENST00000515460 LACTBP83111 547 aaPredicted RBP6.26□□□□□ -1.41
NUP54-218ENST00000515460 PRKG1Q13976 671 aa6.26□□□□□ -1.41
NUP54-218ENST00000515460 USP10Q14694 798 aaKnown RBP6.26□□□□□ -1.41
NUP54-218ENST00000515460 SYCP1Q15431 976 aa6.26□□□□□ -1.41
NUP54-218ENST00000515460 DACT2Q5SW24 774 aa6.26□□□□□ -1.41
NUP54-218ENST00000515460 ANKRD18AQ8IVF6 992 aa6.26□□□□□ -1.41
NUP54-218ENST00000515460 TSPYL6Q8N831 410 aa6.26□□□□□ -1.41
NUP54-218ENST00000515460 KATNBL1Q9H079 304 aa6.26□□□□□ -1.41
NUP54-218ENST00000515460 CXorf56Q9H5V9 222 aa6.26□□□□□ -1.41
NUP54-218ENST00000515460 SUFUQ9UMX1 484 aa6.26□□□□□ -1.41
NUP54-218ENST00000515460 TESMINQ9Y4I5 508 aa6.26□□□□□ -1.41
NUP54-218ENST00000515460 BPTFQ12830 3046 aa6.26□□□□□ -1.41
NUP54-218ENST00000515460 SSC5DA1L4H1 1573 aa6.26□□□□□ -1.41
NUP54-218ENST00000515460 TEP1Q99973 2627 aaKnown RBP6.26□□□□□ -1.41
NUP54-218ENST00000515460 XDHP47989 1333 aa6.25□□□□□ -1.41
NUP54-218ENST00000515460 DNAH12Q6ZR08 3092 aa6.25□□□□□ -1.41
NUP54-218ENST00000515460 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.25□□□□□ -1.41
NUP54-218ENST00000515460 ANKRD18BA2A2Z9 1011 aa6.25□□□□□ -1.41
NUP54-218ENST00000515460 PI4KAP2A4QPH2 592 aa6.25□□□□□ -1.41
NUP54-218ENST00000515460 GOLGA6CA6NDK9 693 aa6.25□□□□□ -1.41
NUP54-218ENST00000515460 GOLGA6BA6NDN3 693 aa6.25□□□□□ -1.41
NUP54-218ENST00000515460 WNT10BO00744 389 aa6.25□□□□□ -1.41
NUP54-218ENST00000515460 NPTXRO95502 500 aa6.25□□□□□ -1.41
NUP54-218ENST00000515460 GOLGA6DP0CG33 693 aa6.25□□□□□ -1.41
NUP54-218ENST00000515460 PTGS1P23219 599 aa6.25□□□□□ -1.41
NUP54-218ENST00000515460 CASQ1P31415 396 aa6.25□□□□□ -1.41
NUP54-218ENST00000515460 CCT4P50991 539 aaKnown RBP6.25□□□□□ -1.41
NUP54-218ENST00000515460 RRADP55042 308 aa6.25□□□□□ -1.41
NUP54-218ENST00000515460 GSCP56915 257 aaPredicted RBP6.25□□□□□ -1.41
NUP54-218ENST00000515460 FKBP1BP68106 108 aa6.25□□□□□ -1.41
NUP54-218ENST00000515460 IRX1P78414 480 aaPredicted RBP6.25□□□□□ -1.41
NUP54-218ENST00000515460 NOLC1Q14978 699 aaKnown RBP eCLIP6.25□□□□□ -1.41
NUP54-218ENST00000515460 PRKD1Q15139 912 aaPredicted RBP6.25□□□□□ -1.41
NUP54-218ENST00000515460 SHHQ15465 462 aa6.25□□□□□ -1.41
NUP54-218ENST00000515460 HSP90B2PQ58FF3 399 aa6.25□□□□□ -1.41
NUP54-218ENST00000515460 MUM1L1Q5H9M0 696 aa6.25□□□□□ -1.41
NUP54-218ENST00000515460 C9orf50Q5SZB4 431 aa6.25□□□□□ -1.41
NUP54-218ENST00000515460 KSR2Q6VAB6 950 aa6.25□□□□□ -1.41
NUP54-218ENST00000515460 G2E3Q7L622 706 aa6.25□□□□□ -1.41
NUP54-218ENST00000515460 CISD2Q8N5K1 135 aaKnown RBP6.25□□□□□ -1.41
NUP54-218ENST00000515460 PI4KAP1Q8N8J0 262 aa6.25□□□□□ -1.41
NUP54-218ENST00000515460 WDR48Q8TAF3 677 aa6.25□□□□□ -1.41
NUP54-218ENST00000515460 NEIL1Q96FI4 390 aaPredicted RBP6.25□□□□□ -1.41
NUP54-218ENST00000515460 CELF4Q9BZC1 486 aaKnown RBP6.25□□□□□ -1.41
NUP54-218ENST00000515460 KCNH6Q9H252 994 aa6.25□□□□□ -1.41
NUP54-218ENST00000515460 GREM2Q9H772 168 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms