RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 KLRG2A4D1S0 409 aaPredicted RBP4.84□□□□□ -1.63
NUP54-212ENST00000513248 CCDC154A6NI56 674 aa4.84□□□□□ -1.63
NUP54-212ENST00000513248 SGTAO43765 313 aa4.84□□□□□ -1.63
NUP54-212ENST00000513248 ENDOD1O94919 500 aa4.84□□□□□ -1.63
NUP54-212ENST00000513248 S100BP04271 92 aaPredicted RBP4.84□□□□□ -1.63
NUP54-212ENST00000513248 ZSCAN20P17040 1043 aaPredicted RBP4.84□□□□□ -1.63
NUP54-212ENST00000513248 ECHS1P30084 290 aa4.84□□□□□ -1.63
NUP54-212ENST00000513248 FLT3LGP49771 235 aa4.84□□□□□ -1.63
NUP54-212ENST00000513248 NANOS3P60323 173 aaKnown RBP4.84□□□□□ -1.63
NUP54-212ENST00000513248 TARDBPQ13148 414 aaKnown RBP eCLIP4.84□□□□□ -1.63
NUP54-212ENST00000513248 SP140Q13342 867 aa4.84□□□□□ -1.63
NUP54-212ENST00000513248 NOMO1Q15155 1222 aa4.84□□□□□ -1.63
NUP54-212ENST00000513248 LRRC41Q15345 812 aa4.84□□□□□ -1.63
NUP54-212ENST00000513248 ATAT1Q5SQI0 421 aa4.84□□□□□ -1.63
NUP54-212ENST00000513248 NAIF1Q69YI7 327 aaPredicted RBP4.84□□□□□ -1.63
NUP54-212ENST00000513248 FAM180AQ6UWF9 173 aa4.84□□□□□ -1.63
NUP54-212ENST00000513248 B3GNT9Q6UX72 402 aa4.84□□□□□ -1.63
NUP54-212ENST00000513248 REPS2Q8NFH8 660 aa4.84□□□□□ -1.63
NUP54-212ENST00000513248 NSUN6Q8TEA1 469 aaKnown RBP4.84□□□□□ -1.63
NUP54-212ENST00000513248 PGBD4Q96DM1 585 aa4.84□□□□□ -1.63
NUP54-212ENST00000513248 CYFIP2Q96F07 1278 aa4.84□□□□□ -1.63
NUP54-212ENST00000513248 MRGPRX4Q96LA9 322 aa4.84□□□□□ -1.63
NUP54-212ENST00000513248 METTL14Q9HCE5 456 aaKnown RBP4.84□□□□□ -1.63
NUP54-212ENST00000513248 AASDHPPTQ9NRN7 309 aa4.84□□□□□ -1.63
NUP54-212ENST00000513248 CEP72Q9P209 647 aa4.84□□□□□ -1.63
NUP54-212ENST00000513248 KLHL42Q9P2K6 505 aa4.84□□□□□ -1.63
NUP54-212ENST00000513248 C1orf167Q5SNV9 1468 aa4.83□□□□□ -1.64
NUP54-212ENST00000513248 PIK3C2GO75747 1445 aa4.83□□□□□ -1.64
NUP54-212ENST00000513248 PLEKHH1Q9ULM0 1364 aa4.83□□□□□ -1.64
NUP54-212ENST00000513248 GOLGA6L6A8MZA4 724 aa4.83□□□□□ -1.64
NUP54-212ENST00000513248 VCAM1P19320 739 aa4.83□□□□□ -1.64
NUP54-212ENST00000513248 LPOP22079 712 aaPredicted RBP4.83□□□□□ -1.64
NUP54-212ENST00000513248 CCND1P24385 295 aa4.83□□□□□ -1.64
NUP54-212ENST00000513248 PCSK1P29120 753 aa4.83□□□□□ -1.64
NUP54-212ENST00000513248 FXR1P51114 621 aaKnown RBP eCLIP4.83□□□□□ -1.64
NUP54-212ENST00000513248 KIF23Q02241 960 aaPredicted RBP4.83□□□□□ -1.64
NUP54-212ENST00000513248 MTM1Q13496 603 aa4.83□□□□□ -1.64
NUP54-212ENST00000513248 TUBA3CQ13748 450 aa4.83□□□□□ -1.64
NUP54-212ENST00000513248 KRTAP15-1Q3LI76 137 aa4.83□□□□□ -1.64
NUP54-212ENST00000513248 DCAF17Q5H9S7 520 aaPredicted RBP4.83□□□□□ -1.64
NUP54-212ENST00000513248 NXNQ6DKJ4 435 aa4.83□□□□□ -1.64
NUP54-212ENST00000513248 OTUD7BQ6GQQ9 843 aa4.83□□□□□ -1.64
NUP54-212ENST00000513248 TUBA3EQ6PEY2 450 aa4.83□□□□□ -1.64
NUP54-212ENST00000513248 KRT28Q7Z3Y7 464 aa4.83□□□□□ -1.64
NUP54-212ENST00000513248 LDLRAD3Q86YD5 345 aa4.83□□□□□ -1.64
NUP54-212ENST00000513248 ZGPATQ8N5A5 531 aaKnown RBP4.83□□□□□ -1.64
NUP54-212ENST00000513248 NGDNQ8NEJ9 315 aaKnown RBP4.83□□□□□ -1.64
NUP54-212ENST00000513248 OR52N2Q8NGI0 321 aa4.83□□□□□ -1.64
NUP54-212ENST00000513248 NEU4Q8WWR8 484 aaPredicted RBP4.83□□□□□ -1.64
NUP54-212ENST00000513248 JPH3Q8WXH2 748 aaPredicted RBP4.83□□□□□ -1.64
NUP54-212ENST00000513248 JDP2Q8WYK2 163 aa4.83□□□□□ -1.64
NUP54-212ENST00000513248 AIFM3Q96NN9 605 aa4.83□□□□□ -1.64
NUP54-212ENST00000513248 CDC5LQ99459 802 aaKnown RBP4.83□□□□□ -1.64
NUP54-212ENST00000513248 MNTQ99583 582 aa4.83□□□□□ -1.64
NUP54-212ENST00000513248 CPPED1Q9BRF8 314 aaPredicted RBP4.83□□□□□ -1.64
NUP54-212ENST00000513248 CPEB1Q9BZB8 566 aaKnown RBP4.83□□□□□ -1.64
NUP54-212ENST00000513248 PARPBPQ9NWS1 579 aa4.83□□□□□ -1.64
NUP54-212ENST00000513248 ZIM2Q9NZV7 527 aa4.83□□□□□ -1.64
NUP54-212ENST00000513248 IP6K2Q9UHH9 426 aa4.83□□□□□ -1.64
NUP54-212ENST00000513248 INTUQ9ULD6 942 aa4.83□□□□□ -1.64
NUP54-212ENST00000513248 DNM3Q9UQ16 869 aa4.83□□□□□ -1.64
NUP54-212ENST00000513248 MYOM2P54296 1465 aa4.82□□□□□ -1.64
NUP54-212ENST00000513248 EIF3AQ14152 1382 aaKnown RBP4.82□□□□□ -1.64
NUP54-212ENST00000513248 AFF2P51816 1311 aa4.82□□□□□ -1.64
NUP54-212ENST00000513248 PNPLA7Q6ZV29 1317 aa4.82□□□□□ -1.64
NUP54-212ENST00000513248 GRXCR1A8MXD5 290 aa4.82□□□□□ -1.64
NUP54-212ENST00000513248 PJA2O43164 708 aa4.82□□□□□ -1.64
NUP54-212ENST00000513248 PRPF3O43395 683 aaKnown RBP4.82□□□□□ -1.64
NUP54-212ENST00000513248 TSPAN6O43657 245 aa4.82□□□□□ -1.64
NUP54-212ENST00000513248 ADH4P08319 380 aa4.82□□□□□ -1.64
NUP54-212ENST00000513248 PF4V1P10720 104 aa4.82□□□□□ -1.64
NUP54-212ENST00000513248 HK1P19367 917 aa4.82□□□□□ -1.64
NUP54-212ENST00000513248 MAKP20794 623 aa4.82□□□□□ -1.64
NUP54-212ENST00000513248 PDCP20941 246 aa4.82□□□□□ -1.64
NUP54-212ENST00000513248 SLC16A1P53985 500 aa4.82□□□□□ -1.64
NUP54-212ENST00000513248 CDC42EP1Q00587 391 aa4.82□□□□□ -1.64
NUP54-212ENST00000513248 APBA1Q02410 837 aa4.82□□□□□ -1.64
NUP54-212ENST00000513248 IL10RAQ13651 578 aa4.82□□□□□ -1.64
NUP54-212ENST00000513248 BMT2Q1RMZ1 405 aa4.82□□□□□ -1.64
NUP54-212ENST00000513248 FAM102BQ5T8I3 360 aa4.82□□□□□ -1.64
NUP54-212ENST00000513248 ANKS6Q68DC2 871 aa4.82□□□□□ -1.64
NUP54-212ENST00000513248 DRICH1Q6PGQ1 229 aaPredicted RBP4.82□□□□□ -1.64
NUP54-212ENST00000513248 USP45Q70EL2 814 aa4.82□□□□□ -1.64
NUP54-212ENST00000513248 EPM2AIP1Q7L775 607 aaPredicted RBP4.82□□□□□ -1.64
NUP54-212ENST00000513248 FAM83AQ86UY5 434 aa4.82□□□□□ -1.64
NUP54-212ENST00000513248 TCEAL8Q8IYN2 117 aa4.82□□□□□ -1.64
NUP54-212ENST00000513248 PQLC1Q8N2U9 271 aa4.82□□□□□ -1.64
NUP54-212ENST00000513248 MDM1Q8TC05 714 aa4.82□□□□□ -1.64
NUP54-212ENST00000513248 IFI44Q8TCB0 444 aa4.82□□□□□ -1.64
NUP54-212ENST00000513248 HPS3Q969F9 1004 aa4.82□□□□□ -1.64
NUP54-212ENST00000513248 HDAC10Q969S8 669 aa4.82□□□□□ -1.64
NUP54-212ENST00000513248 GTPBP4Q9BZE4 634 aaKnown RBP4.82□□□□□ -1.64
NUP54-212ENST00000513248 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.82□□□□□ -1.64
NUP54-212ENST00000513248 ZNF180Q9UJW8 692 aa4.82□□□□□ -1.64
NUP54-212ENST00000513248 PPLO60437 1756 aa4.82□□□□□ -1.64
NUP54-212ENST00000513248 AHDC1Q5TGY3 1603 aaPredicted RBP4.82□□□□□ -1.64
NUP54-212ENST00000513248 GPRASP1Q5JY77 1395 aa4.81□□□□□ -1.64
NUP54-212ENST00000513248 PNPLA6Q8IY17 1366 aa4.81□□□□□ -1.64
NUP54-212ENST00000513248 XDHP47989 1333 aa4.81□□□□□ -1.64
NUP54-212ENST00000513248 TBKBP1A7MCY6 615 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms