RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 SRP72O76094 671 aaKnown RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 IL18RAPO95256 599 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 ATP6V1G2O95670 118 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 NTRK1P04629 796 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 TCF4P15884 667 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 ZNF23P17027 643 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 RAB4AP20338 218 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 RASA1P20936 1047 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 PSMA2P25787 234 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 SLC1A1P43005 524 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 STARP49675 285 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 HK2P52789 917 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 BTN3A2P78410 334 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 UBE3AQ05086 875 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 PRKG2Q13237 762 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 ALCAMQ13740 583 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 AARS2Q5JTZ9 985 aaKnown RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 PDZK1Q5T2W1 519 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 E4F1Q66K89 784 aaPredicted RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 LIN54Q6MZP7 749 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 SMIM5Q71RC9 77 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 LONP2Q86WA8 852 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 VSTM4Q8IW00 320 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 ZNF444Q8N0Y2 327 aaPredicted RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 RNF217Q8TC41 542 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 SLC26A7Q8TE54 656 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 OSCP1Q8WVF1 389 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 FAM122AQ96E09 287 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 TGS1Q96RS0 853 aaKnown RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 ORAI2Q96SN7 254 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 METTL22Q9BUU2 404 aaPredicted RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 SPRTNQ9H040 489 aaPredicted RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 CABP2Q9NPB3 220 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 USE1Q9NZ43 259 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 PTTG2Q9NZH5 202 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 TMEM63CQ9P1W3 806 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 SNX14Q9Y5W7 946 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 GCC2Q8IWJ2 1684 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 CCDC154A6NI56 674 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 ZNF233A6NK53 670 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 EPN2O95208 641 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 SNX4O95219 450 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 GDF11O95390 407 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 FGAP02671 866 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 TRAPPC10P48553 1259 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 RGS7P49802 495 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 PEX5P50542 639 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 RPL10AP62906 217 aaKnown RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 HDLBPQ00341 1268 aaKnown RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 GABPAQ06546 454 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 TRAF2Q12933 501 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 SLC9A5Q14940 896 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 TMED2Q15363 201 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 ZBTB6Q15916 424 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 ZNF394Q53GI3 561 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 BEND6Q5SZJ8 279 aaPredicted RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 ERMARDQ5T6L9 678 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 NAA35Q5VZE5 725 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 SMYD5Q6GMV2 418 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 WDR93Q6P2C0 686 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 NEK5Q6P3R8 708 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 MTHFD1LQ6UB35 978 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 CCDC81Q6ZN84 652 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 MFSD6Q6ZSS7 791 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 KRT25Q7Z3Z0 450 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 WAPLQ7Z5K2 1190 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 METTL16Q86W50 562 aaKnown RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 ADSSL1Q8N142 457 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 ANKRD44Q8N8A2 993 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 SSH3Q8TE77 659 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 SNX19Q92543 992 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 C18orf25Q96B23 403 aaPredicted RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 SLF1Q9BQI6 1058 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 MXD3Q9BW11 206 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 ACAT2Q9BWD1 397 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 OSBPL6Q9BZF3 934 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 CNNM1Q9NRU3 951 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 VPS45Q9NRW7 570 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 ZSCAN32Q9NX65 697 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 MAP10Q9P2G4 905 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 MGAT4AQ9UM21 535 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 PCDHGA10Q9Y5H3 936 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 AK5Q9Y6K8 562 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 CNTNAP1P78357 1384 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 FAM86C2PA6NEL3 165 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 H7C2Y5 167 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 DNM1LO00429 736 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 NARSO43776 548 aaKnown RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 LDOC1O95751 146 aaPredicted RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 DHFRP00374 187 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 ZNF806P0C7X5 589 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 DLATP10515 647 aaKnown RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 PRKAR1AP10644 381 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 CCDC130P13994 396 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 PDGFRAP16234 1089 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 NCF2P19878 526 aaPredicted RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 FGFR3P22607 806 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 PTPN4P29074 926 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 BRCC3P46736 316 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 ANXA11P50995 505 aaKnown RBP3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms