RNA–Protein interactions for RNA: ENST00000508342.5

NEDD4-208, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,235 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-208ENST00000508342 KLHL33A6NCF5 533 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 CAND2O75155 1236 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 PLA2G4BP0C869 781 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 GLUD2P49448 558 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 CDH8P55286 799 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 MTMR3Q13615 1198 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 ALCAMQ13740 583 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 CEP55Q53EZ4 464 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 LRRC69Q6ZNQ3 347 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 VSIG10LQ86VR7 867 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 RAB42Q8N4Z0 105 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 DEFB119Q8N690 84 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 TMCO5AQ8N6Q1 288 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 FAM76AQ8TAV0 307 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 CCDC163A0A0D9SF12 145 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 N4BP1O75113 896 aaKnown RBP3.14□□□□□ -1.91
NEDD4-208ENST00000508342 HIP1RO75146 1068 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 CD58P19256 250 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 IFNA8P32881 189 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 RBL2Q08999 1139 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 MYSM1Q5VVJ2 828 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 E4F1Q66K89 784 aaPredicted RBP3.14□□□□□ -1.91
NEDD4-208ENST00000508342 CNGA4Q8IV77 575 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 DIS3L2Q8IYB7 885 aaKnown RBP3.14□□□□□ -1.91
NEDD4-208ENST00000508342 SVIPQ8NHG7 77 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 WDR48Q8TAF3 677 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 TRAPPC12Q8WVT3 735 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 CCDC127Q96BQ5 260 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 ZNF653Q96CK0 615 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 LRCH3Q96II8 777 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 FAM20AQ96MK3 541 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 PGLYRP2Q96PD5 576 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 CDK5RAP1Q96SZ6 601 aaKnown RBP3.14□□□□□ -1.91
NEDD4-208ENST00000508342 PTPN18Q99952 460 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 RNF26Q9BY78 433 aaPredicted RBP3.14□□□□□ -1.91
NEDD4-208ENST00000508342 TRIM55Q9BYV6 548 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 BLZF1Q9H2G9 400 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 CHST12Q9NRB3 414 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 GGT7Q9UJ14 662 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 ZNF112Q9UJU3 913 aa3.14□□□□□ -1.91
NEDD4-208ENST00000508342 TRIOBPQ9H2D6 2365 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 A0A087WZ62 844 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 A8MXQ7 604 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 PALM2-AKAP2B1ALY0 433 aaPredicted RBP3.13□□□□□ -1.91
NEDD4-208ENST00000508342 H0Y626 953 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 PODXLO00592 558 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 CYB561D2O14569 222 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 ATG13O75143 517 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 USP17L7P0C7H9 530 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 CYBAP13498 195 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 MAPK9P45984 424 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 PURAQ00577 322 aaKnown RBP3.13□□□□□ -1.91
NEDD4-208ENST00000508342 CCDC183Q5T5S1 534 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 KIF18AQ8NI77 898 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 ZNF274Q96GC6 653 aaPredicted RBP3.13□□□□□ -1.91
NEDD4-208ENST00000508342 FDXACB1Q9BRP7 624 aaPredicted RBP3.13□□□□□ -1.91
NEDD4-208ENST00000508342 MED4Q9NPJ6 270 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 PRMT7Q9NVM4 692 aaPredicted RBP3.13□□□□□ -1.91
NEDD4-208ENST00000508342 FLRT1Q9NZU1 646 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 CLCA2Q9UQC9 943 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 MYO5AQ9Y4I1 1855 aaKnown RBP3.13□□□□□ -1.91
NEDD4-208ENST00000508342 TCHHQ07283 1943 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 PDIA3P30101 505 aaKnown RBP3.13□□□□□ -1.91
NEDD4-208ENST00000508342 RFX5P48382 616 aaPredicted RBP3.13□□□□□ -1.91
NEDD4-208ENST00000508342 ADCY1Q08828 1119 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 NME3Q13232 169 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 PSMD6Q15008 389 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 TAF11Q15544 211 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 ALX1Q15699 326 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 ARL13BQ3SXY8 428 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 PABPC1LQ4VXU2 614 aaKnown RBP3.13□□□□□ -1.91
NEDD4-208ENST00000508342 ARMC6Q6NXE6 501 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 ANKS3Q6ZW76 656 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 LRRC49Q8IUZ0 686 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 CCDC170Q8IYT3 715 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 TAB3Q8N5C8 712 aaPredicted RBP3.13□□□□□ -1.91
NEDD4-208ENST00000508342 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP3.13□□□□□ -1.91
NEDD4-208ENST00000508342 FAM133AQ8N9E0 248 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 ASIC4Q96FT7 647 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 CDCA3Q99618 268 aaPredicted RBP3.13□□□□□ -1.91
NEDD4-208ENST00000508342 OGDHLQ9ULD0 1010 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 BZW2Q9Y6E2 419 aaKnown RBP3.13□□□□□ -1.91
NEDD4-208ENST00000508342 DNAJC13O75165 2243 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 FRMPD3Q5JV73 1810 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 SMIM35A0A1B0GVV1 85 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 TMEM247A6NEH6 219 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 AGRPO00253 132 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 OPLAHO14841 1288 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 KRT86O43790 486 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 NOL3O60936 208 aaKnown RBP3.13□□□□□ -1.91
NEDD4-208ENST00000508342 ADH1CP00326 375 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 SERPINB4P48594 390 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 UBASH3AP57075 661 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 RPL10AP62906 217 aaKnown RBP3.13□□□□□ -1.91
NEDD4-208ENST00000508342 KRT83P78385 493 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 TWF1Q12792 350 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 GRM2Q14416 872 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 TPRG1Q6ZUI0 275 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 UBL4BQ8N7F7 174 aa3.13□□□□□ -1.91
NEDD4-208ENST00000508342 RDM1Q8NG50 284 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms