RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 DTX3LQ8TDB6 740 aa18.1■□□□□ 0.49
SQSTM1-211ENST00000506690 ANAPC7Q9UJX3 599 aa18.1■□□□□ 0.49
SQSTM1-211ENST00000506690 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.1■□□□□ 0.49
SQSTM1-211ENST00000506690 A0A1W2PPM1 405 aa18.09■□□□□ 0.49
SQSTM1-211ENST00000506690 CFAP69A5D8W1 941 aa18.09■□□□□ 0.49
SQSTM1-211ENST00000506690 PIK3CDO00329 1044 aa18.09■□□□□ 0.49
SQSTM1-211ENST00000506690 RGL2O15211 777 aa18.09■□□□□ 0.49
SQSTM1-211ENST00000506690 DNAJC6O75061 913 aa18.09■□□□□ 0.49
SQSTM1-211ENST00000506690 CYP11B1P15538 503 aa18.09■□□□□ 0.49
SQSTM1-211ENST00000506690 MAPK4P31152 587 aa18.09■□□□□ 0.49
SQSTM1-211ENST00000506690 ODR4Q5SWX8 454 aa18.09■□□□□ 0.49
SQSTM1-211ENST00000506690 C15orf52Q6ZUT6 534 aaKnown RBP18.09■□□□□ 0.49
SQSTM1-211ENST00000506690 SDCCAG8Q86SQ7 713 aaPredicted RBP18.09■□□□□ 0.49
SQSTM1-211ENST00000506690 CYP2W1Q8TAV3 490 aa18.09■□□□□ 0.49
SQSTM1-211ENST00000506690 SHC3Q92529 594 aa18.09■□□□□ 0.49
SQSTM1-211ENST00000506690 STMN2Q93045 179 aa18.09■□□□□ 0.49
SQSTM1-211ENST00000506690 CCDC28BQ9BUN5 200 aa18.09■□□□□ 0.49
SQSTM1-211ENST00000506690 MAK16Q9BXY0 300 aaKnown RBP18.09■□□□□ 0.49
SQSTM1-211ENST00000506690 DCTN4Q9UJW0 460 aa18.09■□□□□ 0.49
SQSTM1-211ENST00000506690 GREB1LQ9C091 1923 aaPredicted RBP18.09■□□□□ 0.49
SQSTM1-211ENST00000506690 BTAF1O14981 1849 aa18.09■□□□□ 0.49
SQSTM1-211ENST00000506690 LYNP07948 512 aa18.09■□□□□ 0.49
SQSTM1-211ENST00000506690 RALAP11233 206 aa18.09■□□□□ 0.49
SQSTM1-211ENST00000506690 P3H1Q32P28 736 aa18.09■□□□□ 0.49
SQSTM1-211ENST00000506690 ACAD10Q6JQN1 1059 aa18.09■□□□□ 0.49
SQSTM1-211ENST00000506690 NBPF5PQ86XG9 351 aaPredicted RBP18.09■□□□□ 0.49
SQSTM1-211ENST00000506690 TPH2Q8IWU9 490 aa18.09■□□□□ 0.49
SQSTM1-211ENST00000506690 MCUR1Q96AQ8 359 aa18.09■□□□□ 0.49
SQSTM1-211ENST00000506690 GPR101Q96P66 508 aaPredicted RBP18.09■□□□□ 0.49
SQSTM1-211ENST00000506690 UBE2OQ9C0C9 1292 aaKnown RBP18.09■□□□□ 0.49
SQSTM1-211ENST00000506690 TAS2R1Q9NYW7 299 aa18.09■□□□□ 0.49
SQSTM1-211ENST00000506690 HEY2Q9UBP5 337 aa18.09■□□□□ 0.49
SQSTM1-211ENST00000506690 A8MXQ7 604 aa18.08■□□□□ 0.49
SQSTM1-211ENST00000506690 ZBED4O75132 1171 aa18.08■□□□□ 0.49
SQSTM1-211ENST00000506690 CNPY1Q3B7I2 92 aa18.08■□□□□ 0.49
SQSTM1-211ENST00000506690 LRRC23Q53EV4 343 aaPredicted RBP18.08■□□□□ 0.49
SQSTM1-211ENST00000506690 RINLQ6ZS11 566 aa18.08■□□□□ 0.49
SQSTM1-211ENST00000506690 SYCP3Q8IZU3 236 aa18.08■□□□□ 0.49
SQSTM1-211ENST00000506690 SKA1Q96BD8 255 aa18.08■□□□□ 0.49
SQSTM1-211ENST00000506690 PPCSQ9HAB8 311 aa18.08■□□□□ 0.49
SQSTM1-211ENST00000506690 SLC4A7Q9Y6M7 1214 aa18.08■□□□□ 0.49
SQSTM1-211ENST00000506690 UMODL1Q5DID0 1318 aa18.08■□□□□ 0.48
SQSTM1-211ENST00000506690 GRIN3BO60391 1043 aa18.08■□□□□ 0.48
SQSTM1-211ENST00000506690 FDX1P10109 184 aa18.08■□□□□ 0.48
SQSTM1-211ENST00000506690 PLS3P13797 630 aa18.08■□□□□ 0.48
SQSTM1-211ENST00000506690 SLC1A1P43005 524 aa18.08■□□□□ 0.48
SQSTM1-211ENST00000506690 PTP4A2Q12974 167 aa18.08■□□□□ 0.48
SQSTM1-211ENST00000506690 DAB2IPQ5VWQ8 1189 aa18.08■□□□□ 0.48
SQSTM1-211ENST00000506690 SEPT12Q8IYM1 358 aa18.08■□□□□ 0.48
SQSTM1-211ENST00000506690 VPS52Q8N1B4 723 aa18.08■□□□□ 0.48
SQSTM1-211ENST00000506690 TMEM174Q8WUU8 243 aa18.08■□□□□ 0.48
SQSTM1-211ENST00000506690 DDX1Q92499 740 aaKnown RBP18.08■□□□□ 0.48
SQSTM1-211ENST00000506690 ARHGEF1Q92888 912 aaKnown RBP18.08■□□□□ 0.48
SQSTM1-211ENST00000506690 DYDC2Q96IM9 177 aa18.08■□□□□ 0.48
SQSTM1-211ENST00000506690 FAM118BQ9BPY3 351 aa18.08■□□□□ 0.48
SQSTM1-211ENST00000506690 LBHD1Q9BQE6 289 aaPredicted RBP18.08■□□□□ 0.48
SQSTM1-211ENST00000506690 SPATA16Q9BXB7 569 aa18.08■□□□□ 0.48
SQSTM1-211ENST00000506690 HEMGNQ9BXL5 484 aa18.08■□□□□ 0.48
SQSTM1-211ENST00000506690 SLC24A2Q9UI40 661 aa18.08■□□□□ 0.48
SQSTM1-211ENST00000506690 PMM2O15305 246 aa18.07■□□□□ 0.48
SQSTM1-211ENST00000506690 FOSP01100 380 aaPredicted RBP18.07■□□□□ 0.48
SQSTM1-211ENST00000506690 CYP1A1P04798 512 aaPredicted RBP18.07■□□□□ 0.48
SQSTM1-211ENST00000506690 CETN2P41208 172 aa18.07■□□□□ 0.48
SQSTM1-211ENST00000506690 KRT72Q14CN4 511 aa18.07■□□□□ 0.48
SQSTM1-211ENST00000506690 FASTKD3Q14CZ7 662 aaKnown RBP18.07■□□□□ 0.48
SQSTM1-211ENST00000506690 AMIGO3Q86WK7 504 aa18.07■□□□□ 0.48
SQSTM1-211ENST00000506690 SLF2Q8IX21 1173 aa18.07■□□□□ 0.48
SQSTM1-211ENST00000506690 SCYL3Q8IZE3 742 aa18.07■□□□□ 0.48
SQSTM1-211ENST00000506690 ASCC2Q9H1I8 757 aaPredicted RBP18.07■□□□□ 0.48
SQSTM1-211ENST00000506690 CD209Q9NNX6 404 aa18.07■□□□□ 0.48
SQSTM1-211ENST00000506690 LARSQ9P2J5 1176 aaKnown RBP18.07■□□□□ 0.48
SQSTM1-211ENST00000506690 WASF2Q9Y6W5 498 aa18.07■□□□□ 0.48
SQSTM1-211ENST00000506690 UBTFL6P0CB48 400 aaPredicted RBP18.07■□□□□ 0.48
SQSTM1-211ENST00000506690 KRT4P19013 534 aa18.07■□□□□ 0.48
SQSTM1-211ENST00000506690 ADRA1DP25100 572 aa18.07■□□□□ 0.48
SQSTM1-211ENST00000506690 SHMT1P34896 483 aa18.07■□□□□ 0.48
SQSTM1-211ENST00000506690 NEK3P51956 506 aa18.07■□□□□ 0.48
SQSTM1-211ENST00000506690 OVGP1Q12889 678 aa18.07■□□□□ 0.48
SQSTM1-211ENST00000506690 PICALMQ13492 652 aa18.07■□□□□ 0.48
SQSTM1-211ENST00000506690 NFIXQ14938 502 aa18.07■□□□□ 0.48
SQSTM1-211ENST00000506690 OTOP1Q7RTM1 612 aa18.07■□□□□ 0.48
SQSTM1-211ENST00000506690 PLEKHO2Q8TD55 490 aa18.07■□□□□ 0.48
SQSTM1-211ENST00000506690 NDNQ99608 321 aa18.07■□□□□ 0.48
SQSTM1-211ENST00000506690 KCND2Q9NZV8 630 aa18.07■□□□□ 0.48
SQSTM1-211ENST00000506690 PSMC3IPQ9P2W1 217 aaPredicted RBP18.07■□□□□ 0.48
SQSTM1-211ENST00000506690 A0A0G2JND7 137 aa18.06■□□□□ 0.48
SQSTM1-211ENST00000506690 DNALI1O14645 258 aaPredicted RBP18.06■□□□□ 0.48
SQSTM1-211ENST00000506690 RARBP10826 455 aa18.06■□□□□ 0.48
SQSTM1-211ENST00000506690 PABPC1LQ4VXU2 614 aaKnown RBP18.06■□□□□ 0.48
SQSTM1-211ENST00000506690 PPM1KQ8N3J5 372 aa18.06■□□□□ 0.48
SQSTM1-211ENST00000506690 DDX51Q8N8A6 666 aaKnown RBP eCLIP18.06■□□□□ 0.48
SQSTM1-211ENST00000506690 IWS1Q96ST2 819 aa18.06■□□□□ 0.48
SQSTM1-211ENST00000506690 DDX50Q9BQ39 737 aaKnown RBP18.06■□□□□ 0.48
SQSTM1-211ENST00000506690 TRIM55Q9BYV6 548 aa18.06■□□□□ 0.48
SQSTM1-211ENST00000506690 TMEM117Q9H0C3 514 aa18.06■□□□□ 0.48
SQSTM1-211ENST00000506690 VCX3BQ9H321 246 aa18.06■□□□□ 0.48
SQSTM1-211ENST00000506690 PCIF1Q9H4Z3 704 aa18.06■□□□□ 0.48
SQSTM1-211ENST00000506690 KCNK13Q9HB14 408 aa18.06■□□□□ 0.48
SQSTM1-211ENST00000506690 VCX3AQ9NNX9 186 aa18.06■□□□□ 0.48
SQSTM1-211ENST00000506690 SERPINB13Q9UIV8 391 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms