RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.44□□□□□ -1.54
USP54-216ENST00000498143 FEM1BQ9UK73 627 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 EDARQ9UNE0 448 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 COL6A6A6NMZ7 2263 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 CHURC1-FNTBB4DL54 471 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 F8W810 466 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 EYA2O00167 538 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 EXTL3O43909 919 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 KCNK5O95279 499 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 ALDH2P05091 517 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 EIF2S1P05198 315 aaKnown RBP5.44□□□□□ -1.54
USP54-216ENST00000498143 FSHRP23945 695 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 FNTBP49356 437 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 PDE6CP51160 858 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 EVX2Q03828 476 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 UBE3AQ05086 875 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 TRIM28Q13263 835 aaKnown RBP5.44□□□□□ -1.54
USP54-216ENST00000498143 MPP3Q13368 585 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 POSTNQ15063 836 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 ERCC6LQ2NKX8 1250 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 TAF2Q6P1X5 1199 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 NFRKBQ6P4R8 1299 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 ERICH5Q6P6B1 374 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 CHD1LQ86WJ1 897 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 PLPP6Q8IY26 295 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 NSUN6Q8TEA1 469 aaKnown RBP5.44□□□□□ -1.54
USP54-216ENST00000498143 PPP1R13LQ8WUF5 828 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 COLEC11Q9BWP8 271 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 KIAA1683Q9H0B3 1180 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 ZFP14Q9HCL3 533 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 DIABLOQ9NR28 239 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 FAM217BQ9NTX9 383 aaPredicted RBP5.44□□□□□ -1.54
USP54-216ENST00000498143 ANO10Q9NW15 660 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 DDX56Q9NY93 547 aaKnown RBP5.44□□□□□ -1.54
USP54-216ENST00000498143 DACT1Q9NYF0 836 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 ZKSCAN7Q9P0L1 754 aaPredicted RBP5.44□□□□□ -1.54
USP54-216ENST00000498143 FBXO4Q9UKT5 387 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 DOLKQ9UPQ8 538 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 TMEM5Q9Y2B1 443 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 IQGAP3Q86VI3 1631 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 C2orf81A6NN90 581 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 TMEM127O75204 238 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 SURF6O75683 361 aaKnown RBP5.43□□□□□ -1.54
USP54-216ENST00000498143 RBP3P10745 1247 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 IL1R1P14778 569 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 MLH1P40692 756 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 MXI1P50539 228 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 PEX5P50542 639 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 DHX9Q08211 1270 aaKnown RBP5.43□□□□□ -1.54
USP54-216ENST00000498143 CALCOCO2Q13137 446 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 CAMK4Q16566 473 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 TTC39BQ5VTQ0 682 aaPredicted RBP5.43□□□□□ -1.54
USP54-216ENST00000498143 CAPN12Q6ZSI9 719 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 VPS52Q8N1B4 723 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 TAB3Q8N5C8 712 aaPredicted RBP5.43□□□□□ -1.54
USP54-216ENST00000498143 MAGEB6Q8N7X4 407 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 PI4K2BQ8TCG2 481 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 NXPE2Q96DL1 559 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 ERP27Q96DN0 273 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 SIKE1Q9BRV8 207 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 ZWILCHQ9H900 591 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 KIF9Q9HAQ2 790 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 NEUROD4Q9HD90 331 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 TBK1Q9UHD2 729 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 KANSL1LA0AUZ9 987 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 SYNDIG1LA6NDD5 238 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 ZNF197O14709 1029 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 CRTAPO75718 401 aaPredicted RBP5.43□□□□□ -1.54
USP54-216ENST00000498143 CSE1LP55060 971 aaKnown RBP5.43□□□□□ -1.54
USP54-216ENST00000498143 CYP4F3Q08477 520 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 NDUFA5Q16718 116 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 TRIM61Q5EBN2 209 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 CCDC102BQ68D86 513 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 PASD1Q8IV76 773 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 UBL4BQ8N7F7 174 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 ZNF579Q8NAF0 562 aaKnown RBP5.43□□□□□ -1.54
USP54-216ENST00000498143 MDM1Q8TC05 714 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 NCLNQ969V3 563 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 USP28Q96RU2 1077 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 EFHD1Q9BUP0 239 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 FOXQ1Q9C009 403 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 PHAXQ9H814 394 aaKnown RBP5.43□□□□□ -1.54
USP54-216ENST00000498143 BABAM1Q9NWV8 329 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 PCDHGA4Q9Y5G9 962 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 N6AMT1Q9Y5N5 214 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 CCDC69A6NI79 296 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 NOL3O60936 208 aaKnown RBP5.43□□□□□ -1.54
USP54-216ENST00000498143 S100A6P06703 90 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 PMS2P54278 862 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 COG7P83436 770 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 STX3Q13277 289 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 PPP1R18Q6NYC8 613 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 TSSK4Q6SA08 328 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 RIOX2Q8IUF8 465 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 DRAXINQ8NBI3 349 aaPredicted RBP5.43□□□□□ -1.54
USP54-216ENST00000498143 EZH1Q92800 747 aaPredicted RBP5.43□□□□□ -1.54
USP54-216ENST00000498143 ZNF512Q96ME7 567 aaPredicted RBP5.43□□□□□ -1.54
USP54-216ENST00000498143 MMTAG2Q9BU76 263 aaKnown RBP5.43□□□□□ -1.54
USP54-216ENST00000498143 C8orf4Q9NR00 106 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 TMED5Q9Y3A6 229 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms