RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 H7C4K7 107 aa18.09■□□□□ 0.49
VIM-208ENST00000497849 PODXLO00592 558 aa18.09■□□□□ 0.49
VIM-208ENST00000497849 TOP3BO95985 862 aaKnown RBP18.09■□□□□ 0.49
VIM-208ENST00000497849 FOXC1Q12948 553 aa18.09■□□□□ 0.49
VIM-208ENST00000497849 CTXN3Q4LDR2 81 aa18.09■□□□□ 0.49
VIM-208ENST00000497849 XKR4Q5GH76 650 aa18.09■□□□□ 0.49
VIM-208ENST00000497849 STXBP5Q5T5C0 1151 aa18.09■□□□□ 0.49
VIM-208ENST00000497849 CEP120Q8N960 986 aa18.09■□□□□ 0.49
VIM-208ENST00000497849 MCPH1Q8NEM0 835 aa18.09■□□□□ 0.49
VIM-208ENST00000497849 ZC3H10Q96K80 434 aaKnown RBP18.09■□□□□ 0.49
VIM-208ENST00000497849 VPS45Q9NRW7 570 aa18.09■□□□□ 0.49
VIM-208ENST00000497849 NBEAQ8NFP9 2946 aa18.08■□□□□ 0.49
VIM-208ENST00000497849 A0A1W2PRU2 124 aa18.08■□□□□ 0.48
VIM-208ENST00000497849 CCDC192P0DO97 292 aa18.08■□□□□ 0.48
VIM-208ENST00000497849 ATP2B1P20020 1258 aa18.08■□□□□ 0.48
VIM-208ENST00000497849 NT5DC1Q5TFE4 455 aa18.08■□□□□ 0.48
VIM-208ENST00000497849 ALKAL1Q6UXT8 129 aa18.08■□□□□ 0.48
VIM-208ENST00000497849 RNF19BQ6ZMZ0 732 aa18.08■□□□□ 0.48
VIM-208ENST00000497849 TMC8Q8IU68 726 aa18.08■□□□□ 0.48
VIM-208ENST00000497849 ARID3BQ8IVW6 561 aaPredicted RBP18.08■□□□□ 0.48
VIM-208ENST00000497849 ZMAT2Q96NC0 199 aaKnown RBP18.08■□□□□ 0.48
VIM-208ENST00000497849 LARP6Q9BRS8 491 aaKnown RBP18.08■□□□□ 0.48
VIM-208ENST00000497849 MKNK1Q9BUB5 465 aa18.08■□□□□ 0.48
VIM-208ENST00000497849 ADAM33Q9BZ11 813 aa18.08■□□□□ 0.48
VIM-208ENST00000497849 TTC12Q9H892 705 aaPredicted RBP18.08■□□□□ 0.48
VIM-208ENST00000497849 SRRM3A6NNA2 597 aaPredicted RBP18.07■□□□□ 0.48
VIM-208ENST00000497849 AKAP3O75969 853 aa18.07■□□□□ 0.48
VIM-208ENST00000497849 VNN2O95498 520 aa18.07■□□□□ 0.48
VIM-208ENST00000497849 SPATA31C1P0DKV0 1188 aa18.07■□□□□ 0.48
VIM-208ENST00000497849 ZNF252P-AS1Q0IIN9 211 aa18.07■□□□□ 0.48
VIM-208ENST00000497849 FAM200AQ8TCP9 573 aa18.07■□□□□ 0.48
VIM-208ENST00000497849 GATA6Q92908 595 aa18.07■□□□□ 0.48
VIM-208ENST00000497849 ZNF274Q96GC6 653 aaPredicted RBP18.07■□□□□ 0.48
VIM-208ENST00000497849 KIFC3Q9BVG8 833 aa18.07■□□□□ 0.48
VIM-208ENST00000497849 DNAJC25Q9H1X3 360 aa18.07■□□□□ 0.48
VIM-208ENST00000497849 MAFFQ9ULX9 164 aa18.07■□□□□ 0.48
VIM-208ENST00000497849 YIPF1Q9Y548 306 aa18.07■□□□□ 0.48
VIM-208ENST00000497849 C4orf47A7E2U8 309 aa18.06■□□□□ 0.48
VIM-208ENST00000497849 CDC45O75419 566 aa18.06■□□□□ 0.48
VIM-208ENST00000497849 PSMA5P28066 241 aa18.06■□□□□ 0.48
VIM-208ENST00000497849 NAMPTP43490 491 aa18.06■□□□□ 0.48
VIM-208ENST00000497849 TNK2Q07912 1038 aa18.06■□□□□ 0.48
VIM-208ENST00000497849 STK3Q13188 491 aa18.06■□□□□ 0.48
VIM-208ENST00000497849 PLK5Q496M5 336 aa18.06■□□□□ 0.48
VIM-208ENST00000497849 ARHGAP29Q52LW3 1261 aa18.06■□□□□ 0.48
VIM-208ENST00000497849 ATF7IP2Q5U623 682 aa18.06■□□□□ 0.48
VIM-208ENST00000497849 ZNF280DQ6N043 979 aa18.06■□□□□ 0.48
VIM-208ENST00000497849 BEST2Q8NFU1 509 aa18.06■□□□□ 0.48
VIM-208ENST00000497849 DEPTORQ8TB45 409 aa18.06■□□□□ 0.48
VIM-208ENST00000497849 EDEM2Q9BV94 578 aa18.06■□□□□ 0.48
VIM-208ENST00000497849 CRISPLD1Q9H336 500 aa18.06■□□□□ 0.48
VIM-208ENST00000497849 CITO14578 2027 aa18.06■□□□□ 0.48
VIM-208ENST00000497849 NUP205Q92621 2012 aa18.06■□□□□ 0.48
VIM-208ENST00000497849 TMEM8BA6NDV4 472 aa18.05■□□□□ 0.48
VIM-208ENST00000497849 DTNBO60941 627 aa18.05■□□□□ 0.48
VIM-208ENST00000497849 TXKP42681 527 aa18.05■□□□□ 0.48
VIM-208ENST00000497849 CACNB1Q02641 598 aaPredicted RBP18.05■□□□□ 0.48
VIM-208ENST00000497849 CALCRLQ16602 461 aa18.05■□□□□ 0.48
VIM-208ENST00000497849 LRSAM1Q6UWE0 723 aa18.05■□□□□ 0.48
VIM-208ENST00000497849 RUFY3Q7L099 469 aa18.05■□□□□ 0.48
VIM-208ENST00000497849 DDX12PQ92771 950 aa18.05■□□□□ 0.48
VIM-208ENST00000497849 SUSD3Q96L08 255 aa18.05■□□□□ 0.48
VIM-208ENST00000497849 DUSP15Q9H1R2 295 aaPredicted RBP18.05■□□□□ 0.48
VIM-208ENST00000497849 SLC38A7Q9NVC3 462 aa18.05■□□□□ 0.48
VIM-208ENST00000497849 POLR3BQ9NW08 1133 aaPredicted RBP18.05■□□□□ 0.48
VIM-208ENST00000497849 NUB1Q9Y5A7 615 aa18.05■□□□□ 0.48
VIM-208ENST00000497849 WNT7AO00755 349 aa18.04■□□□□ 0.48
VIM-208ENST00000497849 CPB1P15086 417 aa18.04■□□□□ 0.48
VIM-208ENST00000497849 GRM5P41594 1212 aa18.04■□□□□ 0.48
VIM-208ENST00000497849 OSTNP61366 133 aa18.04■□□□□ 0.48
VIM-208ENST00000497849 RING1Q06587 406 aa18.04■□□□□ 0.48
VIM-208ENST00000497849 NR5A1Q13285 461 aa18.04■□□□□ 0.48
VIM-208ENST00000497849 SH3PXD2AQ5TCZ1 1133 aa18.04■□□□□ 0.48
VIM-208ENST00000497849 CPLX2Q6PUV4 134 aaKnown RBP18.04■□□□□ 0.48
VIM-208ENST00000497849 CATSPER3Q86XQ3 398 aa18.04■□□□□ 0.48
VIM-208ENST00000497849 TNFRSF25Q93038 417 aa18.04■□□□□ 0.48
VIM-208ENST00000497849 C18orf25Q96B23 403 aaPredicted RBP18.04■□□□□ 0.48
VIM-208ENST00000497849 TMEM209Q96SK2 561 aa18.04■□□□□ 0.48
VIM-208ENST00000497849 SCNM1Q9BWG6 230 aa18.04■□□□□ 0.48
VIM-208ENST00000497849 POLD4Q9HCU8 107 aa18.04■□□□□ 0.48
VIM-208ENST00000497849 DAXXQ9UER7 740 aaPredicted RBP18.04■□□□□ 0.48
VIM-208ENST00000497849 TNFSF13BQ9Y275 285 aa18.04■□□□□ 0.48
VIM-208ENST00000497849 SOBPA7XYQ1 873 aa18.03■□□□□ 0.48
VIM-208ENST00000497849 MEFVO15553 781 aaPredicted RBP18.03■□□□□ 0.48
VIM-208ENST00000497849 MED24O75448 989 aa18.03■□□□□ 0.48
VIM-208ENST00000497849 KCNE1P15382 129 aa18.03■□□□□ 0.48
VIM-208ENST00000497849 CYP11B2P19099 503 aa18.03■□□□□ 0.48
VIM-208ENST00000497849 RPL9P32969 192 aaKnown RBP18.03■□□□□ 0.48
VIM-208ENST00000497849 YARSP54577 528 aaKnown RBP18.03■□□□□ 0.48
VIM-208ENST00000497849 FSTL4Q6MZW2 842 aa18.03■□□□□ 0.48
VIM-208ENST00000497849 PADI6Q6TGC4 694 aa18.03■□□□□ 0.48
VIM-208ENST00000497849 GAREM2Q75VX8 874 aa18.03■□□□□ 0.48
VIM-208ENST00000497849 HAUS6Q7Z4H7 955 aa18.03■□□□□ 0.48
VIM-208ENST00000497849 CHFRQ96EP1 664 aa18.03■□□□□ 0.48
VIM-208ENST00000497849 MTMR9Q96QG7 549 aa18.03■□□□□ 0.48
VIM-208ENST00000497849 CDT1Q9H211 546 aa18.03■□□□□ 0.48
VIM-208ENST00000497849 ZSWIM6Q9HCJ5 1215 aa18.03■□□□□ 0.48
VIM-208ENST00000497849 PTPRHQ9HD43 1115 aa18.03■□□□□ 0.48
VIM-208ENST00000497849 TOPORSQ9NS56 1045 aaPredicted RBP18.03■□□□□ 0.48
VIM-208ENST00000497849 OBP2AQ9NY56 170 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms