RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 MORC4Q8TE76 937 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 GRK7Q8WTQ7 553 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 PPP2R3CQ969Q6 453 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 TTC25Q96NG3 672 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 TUBB6Q9BUF5 446 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 MANSC1Q9H8J5 431 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 JMJD4Q9H9V9 463 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 SLC17A7Q9P2U7 560 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 NEU2Q9Y3R4 380 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 STK10O94804 968 aaKnown RBP12.36□□□□□ -0.43
HDAC4-210ENST00000493582 PGM3O95394 542 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 GYS1P13807 737 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 SLC18A1P54219 525 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 TCEAL1Q15170 157 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 PRR16Q569H4 304 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 SLC47A2Q86VL8 602 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 TRIM42Q8IWZ5 723 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 ADGRF4Q8IZF3 695 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 MIPOL1Q8TD10 442 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 TCP10LQ8TDR4 215 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 DDX27Q96GQ7 796 aaKnown RBP12.36□□□□□ -0.43
HDAC4-210ENST00000493582 IWS1Q96ST2 819 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 OSBPL8Q9BZF1 889 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 DDX18Q9NVP1 670 aaKnown RBP12.36□□□□□ -0.43
HDAC4-210ENST00000493582 FRMD4BQ9Y2L6 1034 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 CYP26A1O43174 497 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 ZNF862O60290 1169 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 NOP14P78316 857 aaKnown RBP12.36□□□□□ -0.43
HDAC4-210ENST00000493582 SYDE1Q6ZW31 735 aaPredicted RBP12.36□□□□□ -0.43
HDAC4-210ENST00000493582 RASSF3Q86WH2 238 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 NME8Q8N427 588 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 SHKBP1Q8TBC3 707 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 SKA1Q96BD8 255 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 THTPAQ9BU02 230 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 PLVAPQ9BX97 442 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 NMUR2Q9GZQ4 415 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 ARHGEF4Q9NR80 690 aa12.36□□□□□ -0.43
HDAC4-210ENST00000493582 FCHO1O14526 889 aa12.35□□□□□ -0.43
HDAC4-210ENST00000493582 BANF1O75531 89 aa12.35□□□□□ -0.43
HDAC4-210ENST00000493582 MTA2O94776 668 aa12.35□□□□□ -0.43
HDAC4-210ENST00000493582 ENO1P06733 434 aaKnown RBP12.35□□□□□ -0.43
HDAC4-210ENST00000493582 ZSCAN5DPP0CG00 497 aa12.35□□□□□ -0.43
HDAC4-210ENST00000493582 RALAP11233 206 aa12.35□□□□□ -0.43
HDAC4-210ENST00000493582 CDK16Q00536 496 aa12.35□□□□□ -0.43
HDAC4-210ENST00000493582 SPIRE1Q08AE8 756 aa12.35□□□□□ -0.43
HDAC4-210ENST00000493582 MTMR2Q13614 643 aa12.35□□□□□ -0.43
HDAC4-210ENST00000493582 R3HDM1Q15032 1099 aaKnown RBP12.35□□□□□ -0.43
HDAC4-210ENST00000493582 SLC30A10Q6XR72 485 aa12.35□□□□□ -0.43
HDAC4-210ENST00000493582 ALYREFQ86V81 257 aaKnown RBP12.35□□□□□ -0.43
HDAC4-210ENST00000493582 CCDC89Q8N998 374 aa12.35□□□□□ -0.43
HDAC4-210ENST00000493582 RBM15BQ8NDT2 890 aaKnown RBP12.35□□□□□ -0.43
HDAC4-210ENST00000493582 EPS8L1Q8TE68 723 aa12.35□□□□□ -0.43
HDAC4-210ENST00000493582 SNRNP27Q8WVK2 155 aaKnown RBP12.35□□□□□ -0.43
HDAC4-210ENST00000493582 ZBTB39O15060 712 aa12.35□□□□□ -0.43
HDAC4-210ENST00000493582 MYL2P10916 166 aa12.35□□□□□ -0.43
HDAC4-210ENST00000493582 ARL4CP56559 192 aa12.35□□□□□ -0.43
HDAC4-210ENST00000493582 AP2B1P63010 937 aa12.35□□□□□ -0.43
HDAC4-210ENST00000493582 KDSRQ06136 332 aa12.35□□□□□ -0.43
HDAC4-210ENST00000493582 ERFEQ4G0M1 354 aa12.35□□□□□ -0.43
HDAC4-210ENST00000493582 SCUBE1Q8IWY4 988 aa12.35□□□□□ -0.43
HDAC4-210ENST00000493582 TSSK1BQ9BXA7 367 aa12.35□□□□□ -0.43
HDAC4-210ENST00000493582 PHACTR1Q9C0D0 580 aa12.35□□□□□ -0.43
HDAC4-210ENST00000493582 IL1RAPL1Q9NZN1 696 aa12.35□□□□□ -0.43
HDAC4-210ENST00000493582 PNMA6FA0A0J9YX94 578 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 FAM237BA0A1B0GVD1 139 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 hCG_1984214I3L0E3 225 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 TMCC1O94876 653 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 ABHD2P08910 425 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 RAP1GDS1P52306 607 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 MAP3K10Q02779 954 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 MED21Q13503 144 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 EFTUD2Q15029 972 aaKnown RBP eCLIP12.34□□□□□ -0.432e-6■■■■□ 26.2
HDAC4-210ENST00000493582 RASA2Q15283 850 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 RELL1Q8IUW5 271 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 ZBED8Q8IZ13 594 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 ZCCHC9Q8N567 271 aaKnown RBP12.34□□□□□ -0.43
HDAC4-210ENST00000493582 ZNF713Q8N859 430 aaPredicted RBP12.34□□□□□ -0.43
HDAC4-210ENST00000493582 ELMO3Q96BJ8 720 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 CCDC28BQ9BUN5 200 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 SLC7A8Q9UHI5 535 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 ANAPC7Q9UJX3 599 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 A0A0J9YVX5 310 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 CALCAP01258 141 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 CYP1A2P05177 515 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 LDHBP07195 334 aaKnown RBP12.34□□□□□ -0.43
HDAC4-210ENST00000493582 DLDP09622 509 aaKnown RBP12.34□□□□□ -0.43
HDAC4-210ENST00000493582 ETS1P14921 441 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 RPA1P27694 616 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 GCLMP48507 274 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 MTM1Q13496 603 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 PARP10Q53GL7 1025 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 C2CD6Q53TS8 623 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 SFT2D3Q587I9 215 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 C1orf146Q5VVC0 180 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 LPCAT4Q643R3 524 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 ACAD11Q709F0 780 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 TDRPQ86YL5 185 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 TREML1Q86YW5 311 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 ANKMY2Q8IV38 441 aa12.34□□□□□ -0.43
HDAC4-210ENST00000493582 ARHGAP24Q8N264 748 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms