RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 ZBTB10Q96DT7 871 aa5.4□□□□□ -1.55
VPS13A-212ENST00000493341 PRPF18Q99633 342 aaKnown RBP5.4□□□□□ -1.55
VPS13A-212ENST00000493341 RGL1Q9NZL6 768 aa5.4□□□□□ -1.55
VPS13A-212ENST00000493341 ZDHHC8Q9ULC8 765 aa5.4□□□□□ -1.55
VPS13A-212ENST00000493341 ASAP1Q9ULH1 1129 aa5.4□□□□□ -1.55
VPS13A-212ENST00000493341 HOXC11O43248 304 aaPredicted RBP5.39□□□□□ -1.55
VPS13A-212ENST00000493341 MED26O95402 600 aa5.39□□□□□ -1.55
VPS13A-212ENST00000493341 RAP2AP10114 183 aa5.39□□□□□ -1.55
VPS13A-212ENST00000493341 GYS1P13807 737 aa5.39□□□□□ -1.55
VPS13A-212ENST00000493341 IL2RBP14784 551 aa5.39□□□□□ -1.55
VPS13A-212ENST00000493341 GABRB3P28472 473 aa5.39□□□□□ -1.55
VPS13A-212ENST00000493341 LIFRP42702 1097 aa5.39□□□□□ -1.55
VPS13A-212ENST00000493341 CACNB2Q08289 660 aaPredicted RBP5.39□□□□□ -1.55
VPS13A-212ENST00000493341 DCAF12L1Q5VU92 463 aa5.39□□□□□ -1.55
VPS13A-212ENST00000493341 DNAJC5GQ8N7S2 189 aa5.39□□□□□ -1.55
VPS13A-212ENST00000493341 MDM1Q8TC05 714 aa5.39□□□□□ -1.55
VPS13A-212ENST00000493341 OTUD7AQ8TE49 926 aaPredicted RBP5.39□□□□□ -1.55
VPS13A-212ENST00000493341 CLIC6Q96NY7 704 aa5.39□□□□□ -1.55
VPS13A-212ENST00000493341 GDF15Q99988 308 aa5.39□□□□□ -1.55
VPS13A-212ENST00000493341 SEMA6BQ9H3T3 888 aa5.39□□□□□ -1.55
VPS13A-212ENST00000493341 BRD9Q9H8M2 597 aa5.39□□□□□ -1.55
VPS13A-212ENST00000493341 SAYSD1Q9NPB0 183 aa5.39□□□□□ -1.55
VPS13A-212ENST00000493341 MID2Q9UJV3 735 aa5.39□□□□□ -1.55
VPS13A-212ENST00000493341 FBXO10Q9UK96 956 aa5.39□□□□□ -1.55
VPS13A-212ENST00000493341 ADAMTS6Q9UKP5 1117 aa5.39□□□□□ -1.55
VPS13A-212ENST00000493341 FAM184BQ9ULE4 1060 aa5.39□□□□□ -1.55
VPS13A-212ENST00000493341 FCHO1O14526 889 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 USP1O94782 785 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 GNAI2P04899 355 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 ITGA2BP08514 1039 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 CYP2C8P10632 490 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 IL1R2P27930 398 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 ADAM15Q13444 863 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 RTP5Q14D33 572 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 SURF1Q15526 300 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 PRAMEF14Q5SWL7 426 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 AGAP9Q5VTM2 703 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 TANGO2Q6ICL3 276 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 C16orf54Q6UWD8 224 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 CCDC117Q8IWD4 279 aaPredicted RBP5.38□□□□□ -1.55
VPS13A-212ENST00000493341 UCMAQ8WVF2 138 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 CASKIN2Q8WXE0 1202 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 INTS4Q96HW7 963 aaKnown RBP5.38□□□□□ -1.55
VPS13A-212ENST00000493341 SNX27Q96L92 541 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 BARD1Q99728 777 aaKnown RBP5.38□□□□□ -1.55
VPS13A-212ENST00000493341 MYOCQ99972 504 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 MLXIPQ9HAP2 919 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 TBC1D22BQ9NU19 505 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 TBC1D30Q9Y2I9 924 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 OR14I1A6ND48 311 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 PRSS29PA6NIE9 313 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 B4E171 279 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 K7ENM7 598 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 KIAA0391O15091 583 aaKnown RBP5.38□□□□□ -1.55
VPS13A-212ENST00000493341 GFPT2O94808 682 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 UNC5CO95185 931 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 GJB1P08034 283 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 NCAM1P13591 858 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 IDEP14735 1019 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 RRM1P23921 792 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 TSPAN7P41732 249 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 SLC11A2P49281 568 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 ITGA1P56199 1179 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 WNT3AP56704 352 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 PSMC1P62191 440 aaKnown RBP5.38□□□□□ -1.55
VPS13A-212ENST00000493341 DUSP2Q05923 314 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 PLCL1Q15111 1095 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 NBPF8Q3BBV2 869 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 PABPC1LQ4VXU2 614 aaKnown RBP5.38□□□□□ -1.55
VPS13A-212ENST00000493341 SLC45A4Q5BKX6 768 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 AFMIDQ63HM1 303 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 GATAD2AQ86YP4 633 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 PLXDC1Q8IUK5 500 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 CPOQ8IVL8 374 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 AFG1LQ8WV93 481 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 RAPGEF4Q8WZA2 1011 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 GFM2Q969S9 779 aaKnown RBP5.38□□□□□ -1.55
VPS13A-212ENST00000493341 RRP36Q96EU6 259 aaKnown RBP5.38□□□□□ -1.55
VPS13A-212ENST00000493341 CENPOQ9BU64 300 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 SEPSECSQ9HD40 501 aaKnown RBP5.38□□□□□ -1.55
VPS13A-212ENST00000493341 FEM1BQ9UK73 627 aa5.38□□□□□ -1.55
VPS13A-212ENST00000493341 RBM8AQ9Y5S9 174 aaKnown RBP5.38□□□□□ -1.55
VPS13A-212ENST00000493341 A0A087WZ62 844 aa5.37□□□□□ -1.55
VPS13A-212ENST00000493341 RAB27BO00194 218 aa5.37□□□□□ -1.55
VPS13A-212ENST00000493341 TBX18O95935 607 aa5.37□□□□□ -1.55
VPS13A-212ENST00000493341 HMGCRP04035 888 aa5.37□□□□□ -1.55
VPS13A-212ENST00000493341 ITGA5P08648 1049 aa5.37□□□□□ -1.55
VPS13A-212ENST00000493341 TXNP10599 105 aaKnown RBP5.37□□□□□ -1.55
VPS13A-212ENST00000493341 GYPEP15421 78 aa5.37□□□□□ -1.55
VPS13A-212ENST00000493341 KLRC1P26715 233 aa5.37□□□□□ -1.55
VPS13A-212ENST00000493341 KIR2DL3P43628 341 aa5.37□□□□□ -1.55
VPS13A-212ENST00000493341 PAPOLAP51003 745 aaKnown RBP5.37□□□□□ -1.55
VPS13A-212ENST00000493341 UCP3P55916 312 aa5.37□□□□□ -1.55
VPS13A-212ENST00000493341 POU5F1Q01860 360 aaKnown RBP5.37□□□□□ -1.55
VPS13A-212ENST00000493341 PRKG2Q13237 762 aa5.37□□□□□ -1.55
VPS13A-212ENST00000493341 TRPC3Q13507 836 aa5.37□□□□□ -1.55
VPS13A-212ENST00000493341 CUL4BQ13620 913 aa5.37□□□□□ -1.55
VPS13A-212ENST00000493341 KIF22Q14807 665 aa5.37□□□□□ -1.55
VPS13A-212ENST00000493341 DLGAP5Q15398 846 aa5.37□□□□□ -1.55
VPS13A-212ENST00000493341 FAM26FQ5R3K3 315 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms