RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 PIRO00625 290 aa26.72■■□□□ 1.87
UPF3A-209ENST00000492270 KLRC4O43908 158 aa26.72■■□□□ 1.87
UPF3A-209ENST00000492270 EXTL3O43909 919 aa26.72■■□□□ 1.87
UPF3A-209ENST00000492270 LDHAP00338 332 aaKnown RBP26.72■■□□□ 1.87
UPF3A-209ENST00000492270 ASGR2P07307 311 aa26.72■■□□□ 1.87
UPF3A-209ENST00000492270 NDUFA8P51970 172 aa26.72■■□□□ 1.87
UPF3A-209ENST00000492270 LILRA4P59901 499 aa26.72■■□□□ 1.87
UPF3A-209ENST00000492270 ZXDAP98168 799 aa26.72■■□□□ 1.87
UPF3A-209ENST00000492270 NELFCDQ8IXH7 590 aa26.72■■□□□ 1.87
UPF3A-209ENST00000492270 ZDHHC14Q8IZN3 488 aa26.72■■□□□ 1.87
UPF3A-209ENST00000492270 SCFD1Q8WVM8 642 aa26.72■■□□□ 1.87
UPF3A-209ENST00000492270 LIMD1Q9UGP4 676 aa26.72■■□□□ 1.87
UPF3A-209ENST00000492270 PVALEFA0A1B0GWK0 134 aa26.71■■□□□ 1.87
UPF3A-209ENST00000492270 ABLIM3O94929 683 aa26.71■■□□□ 1.87
UPF3A-209ENST00000492270 HNRNPA1P09651 372 aaKnown RBP eCLIP26.71■■□□□ 1.87
UPF3A-209ENST00000492270 NTHL1P78549 312 aa26.71■■□□□ 1.87
UPF3A-209ENST00000492270 OTOP3Q7RTS5 596 aa26.71■■□□□ 1.87
UPF3A-209ENST00000492270 GRASPQ7Z6J2 395 aaPredicted RBP26.71■■□□□ 1.87
UPF3A-209ENST00000492270 GPD1LQ8N335 351 aa26.71■■□□□ 1.87
UPF3A-209ENST00000492270 ZNF461Q8TAF7 563 aa26.71■■□□□ 1.87
UPF3A-209ENST00000492270 ACSF2Q96CM8 615 aaPredicted RBP26.71■■□□□ 1.87
UPF3A-209ENST00000492270 GOLPH3LQ9H4A5 285 aa26.71■■□□□ 1.87
UPF3A-209ENST00000492270 UBE4BO95155 1302 aa26.7■■□□□ 1.87
UPF3A-209ENST00000492270 FAM237AA0A1B0GTK4 181 aa26.7■■□□□ 1.86
UPF3A-209ENST00000492270 TGFB1I1O43294 461 aa26.7■■□□□ 1.86
UPF3A-209ENST00000492270 COL9A1P20849 921 aa26.7■■□□□ 1.86
UPF3A-209ENST00000492270 HOXA9P31269 272 aa26.7■■□□□ 1.86
UPF3A-209ENST00000492270 GBP2P32456 591 aaPredicted RBP26.7■■□□□ 1.86
UPF3A-209ENST00000492270 YWHAHQ04917 246 aaPredicted RBP26.7■■□□□ 1.86
UPF3A-209ENST00000492270 PLCD3Q8N3E9 789 aa26.7■■□□□ 1.86
UPF3A-209ENST00000492270 FSIP1Q8NA03 581 aa26.7■■□□□ 1.86
UPF3A-209ENST00000492270 SENP8Q96LD8 212 aa26.7■■□□□ 1.86
UPF3A-209ENST00000492270 MYADMQ96S97 322 aa26.7■■□□□ 1.86
UPF3A-209ENST00000492270 SMOC2Q9H3U7 446 aa26.7■■□□□ 1.86
UPF3A-209ENST00000492270 PDE11AQ9HCR9 933 aa26.7■■□□□ 1.86
UPF3A-209ENST00000492270 POLIQ9UNA4 740 aa26.7■■□□□ 1.86
UPF3A-209ENST00000492270 PRR33A8MZF0 331 aa26.69■■□□□ 1.86
UPF3A-209ENST00000492270 SYKP43405 635 aa26.69■■□□□ 1.86
UPF3A-209ENST00000492270 TFAMQ00059 246 aaKnown RBP26.69■■□□□ 1.86
UPF3A-209ENST00000492270 SCARA3Q6AZY7 606 aa26.69■■□□□ 1.86
UPF3A-209ENST00000492270 GET4Q7L5D6 327 aaPredicted RBP26.69■■□□□ 1.86
UPF3A-209ENST00000492270 CBWD2Q8IUF1 395 aa26.69■■□□□ 1.86
UPF3A-209ENST00000492270 AGPAT3Q9NRZ7 376 aa26.69■■□□□ 1.86
UPF3A-209ENST00000492270 HCFC1R1Q9NWW0 138 aa26.69■■□□□ 1.86
UPF3A-209ENST00000492270 HSPBP1Q9NZL4 362 aa26.69■■□□□ 1.86
UPF3A-209ENST00000492270 A0A1W2PQ27 194 aa26.68■■□□□ 1.86
UPF3A-209ENST00000492270 A0A1W2PQ64 194 aa26.68■■□□□ 1.86
UPF3A-209ENST00000492270 A0A1W2PQD8 194 aa26.68■■□□□ 1.86
UPF3A-209ENST00000492270 CLIC2O15247 247 aa26.68■■□□□ 1.86
UPF3A-209ENST00000492270 OAZ2O95190 189 aa26.68■■□□□ 1.86
UPF3A-209ENST00000492270 SEC24AO95486 1093 aa26.68■■□□□ 1.86
UPF3A-209ENST00000492270 OR4Q2P0C623 313 aa26.68■■□□□ 1.86
UPF3A-209ENST00000492270 PRR29P0C7W0 189 aa26.68■■□□□ 1.86
UPF3A-209ENST00000492270 CPB1P15086 417 aa26.68■■□□□ 1.86
UPF3A-209ENST00000492270 ATF2P15336 505 aa26.68■■□□□ 1.86
UPF3A-209ENST00000492270 UVSSAQ2YD98 709 aa26.68■■□□□ 1.86
UPF3A-209ENST00000492270 LMBRD2Q68DH5 695 aaPredicted RBP26.68■■□□□ 1.86
UPF3A-209ENST00000492270 TRIM67Q6ZTA4 783 aa26.68■■□□□ 1.86
UPF3A-209ENST00000492270 NT5DC4Q86YG4 428 aa26.68■■□□□ 1.86
UPF3A-209ENST00000492270 USP25Q9UHP3 1055 aa26.68■■□□□ 1.86
UPF3A-209ENST00000492270 SORCS3Q9UPU3 1222 aa26.68■■□□□ 1.86
UPF3A-209ENST00000492270 KIAA0391O15091 583 aaKnown RBP26.67■■□□□ 1.86
UPF3A-209ENST00000492270 XYLBO75191 536 aa26.67■■□□□ 1.86
UPF3A-209ENST00000492270 ODC1P11926 461 aa26.67■■□□□ 1.86
UPF3A-209ENST00000492270 TYMPP19971 482 aa26.67■■□□□ 1.86
UPF3A-209ENST00000492270 BMT2Q1RMZ1 405 aa26.67■■□□□ 1.86
UPF3A-209ENST00000492270 KMT5BQ4FZB7 885 aa26.67■■□□□ 1.86
UPF3A-209ENST00000492270 OVOS1Q6IE37 1185 aa26.67■■□□□ 1.86
UPF3A-209ENST00000492270 RNF19BQ6ZMZ0 732 aa26.67■■□□□ 1.86
UPF3A-209ENST00000492270 USP37Q86T82 979 aa26.67■■□□□ 1.86
UPF3A-209ENST00000492270 C1orf127Q8N9H9 656 aa26.67■■□□□ 1.86
UPF3A-209ENST00000492270 KIAA0895Q8NCT3 520 aa26.67■■□□□ 1.86
UPF3A-209ENST00000492270 CYP4F11Q9HBI6 524 aa26.67■■□□□ 1.86
UPF3A-209ENST00000492270 EXOC1Q9NV70 894 aa26.67■■□□□ 1.86
UPF3A-209ENST00000492270 PTPRJQ12913 1337 aa26.66■■□□□ 1.86
UPF3A-209ENST00000492270 PRRG1O14668 218 aa26.66■■□□□ 1.86
UPF3A-209ENST00000492270 ITGB3P05106 788 aa26.66■■□□□ 1.86
UPF3A-209ENST00000492270 ELF1P32519 619 aa26.66■■□□□ 1.86
UPF3A-209ENST00000492270 TAF6P49848 677 aa26.66■■□□□ 1.86
UPF3A-209ENST00000492270 NUCB2P80303 420 aa26.66■■□□□ 1.86
UPF3A-209ENST00000492270 STK4Q13043 487 aa26.66■■□□□ 1.86
UPF3A-209ENST00000492270 HFE2Q6ZVN8 426 aa26.66■■□□□ 1.86
UPF3A-209ENST00000492270 ARHGEF37A1IGU5 675 aa26.65■■□□□ 1.86
UPF3A-209ENST00000492270 TMEM221A6NGB7 291 aa26.65■■□□□ 1.86
UPF3A-209ENST00000492270 M0R296 226 aa26.65■■□□□ 1.86
UPF3A-209ENST00000492270 VNN2O95498 520 aa26.65■■□□□ 1.86
UPF3A-209ENST00000492270 FSHRP23945 695 aa26.65■■□□□ 1.86
UPF3A-209ENST00000492270 POLR2BP30876 1174 aaKnown RBP26.65■■□□□ 1.86
UPF3A-209ENST00000492270 CYP2J2P51589 502 aa26.65■■□□□ 1.86
UPF3A-209ENST00000492270 ADCY1Q08828 1119 aa26.65■■□□□ 1.86
UPF3A-209ENST00000492270 SIGLEC14Q08ET2 396 aa26.65■■□□□ 1.86
UPF3A-209ENST00000492270 MTMR3Q13615 1198 aa26.65■■□□□ 1.86
UPF3A-209ENST00000492270 TPGS2Q68CL5 300 aa26.65■■□□□ 1.86
UPF3A-209ENST00000492270 TCEAL8Q8IYN2 117 aa26.65■■□□□ 1.86
UPF3A-209ENST00000492270 CXorf38Q8TB03 319 aa26.65■■□□□ 1.86
UPF3A-209ENST00000492270 BORCS6Q96GS4 357 aa26.65■■□□□ 1.86
UPF3A-209ENST00000492270 TMEM209Q96SK2 561 aa26.65■■□□□ 1.86
UPF3A-209ENST00000492270 MTMR12Q9C0I1 747 aa26.65■■□□□ 1.86
UPF3A-209ENST00000492270 DNMT3BQ9UBC3 853 aaKnown RBP26.65■■□□□ 1.86
UPF3A-209ENST00000492270 INSL5Q9Y5Q6 135 aa26.65■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms