RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 LRRC19Q9H756 370 aa11.46□□□□□ -0.57
USP4-214ENST00000491791 IFT122Q9HBG6 1241 aa11.46□□□□□ -0.57
USP4-214ENST00000491791 MRPL47Q9HD33 250 aaKnown RBP11.46□□□□□ -0.57
USP4-214ENST00000491791 ACP6Q9NPH0 428 aa11.46□□□□□ -0.57
USP4-214ENST00000491791 ANKFY1Q9P2R3 1169 aa11.46□□□□□ -0.57
USP4-214ENST00000491791 FAN1Q9Y2M0 1017 aa11.46□□□□□ -0.57
USP4-214ENST00000491791 MROH7Q68CQ1 1323 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 PDHXO00330 501 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 HSF2BPO75031 334 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 PROSCO94903 275 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 LGALS2P05162 132 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 INSRRP14616 1297 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 EIF4BP23588 611 aaKnown RBP11.45□□□□□ -0.58
USP4-214ENST00000491791 ADORA2AP29274 412 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 GNA15P30679 374 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 ATICP31939 592 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 PHKA2P46019 1235 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 NSFP46459 744 aaKnown RBP11.45□□□□□ -0.58
USP4-214ENST00000491791 FNTAP49354 379 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 DNA2P51530 1060 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 YWHAEP62258 255 aaKnown RBP11.45□□□□□ -0.58
USP4-214ENST00000491791 CDC42EP1Q00587 391 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 MTMR3Q13615 1198 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 MESDQ14696 234 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 PCBP1Q15365 356 aaKnown RBP eCLIP11.45□□□□□ -0.58
USP4-214ENST00000491791 SIX1Q15475 284 aaPredicted RBP11.45□□□□□ -0.58
USP4-214ENST00000491791 AMHR2Q16671 573 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 LIN9Q5TKA1 542 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 EFCAB12Q6NXP0 572 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 EEPD1Q7L9B9 569 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 NT5DC4Q86YG4 428 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 GSPT2Q8IYD1 628 aaKnown RBP11.45□□□□□ -0.58
USP4-214ENST00000491791 PRELID2Q8N945 189 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 RBBP8NLQ8NC74 664 aaPredicted RBP11.45□□□□□ -0.58
USP4-214ENST00000491791 TSEN2Q8NCE0 465 aaKnown RBP11.45□□□□□ -0.58
USP4-214ENST00000491791 KRT35Q92764 455 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 C16orf70Q9BSU1 422 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 AP1M1Q9BXS5 423 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 LHX5Q9H2C1 402 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 ASB7Q9H672 318 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 PDGFCQ9NRA1 345 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.45□□□□□ -0.58
USP4-214ENST00000491791 VPS18Q9P253 973 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 SRRDQ9UH36 339 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 CPA4Q9UI42 421 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 MTUS1Q9ULD2 1270 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 UTP11Q9Y3A2 253 aaKnown RBP11.45□□□□□ -0.58
USP4-214ENST00000491791 NR2E1Q9Y466 385 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 PCDHB4Q9Y5E5 795 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 SCINQ9Y6U3 715 aa11.45□□□□□ -0.58
USP4-214ENST00000491791 ANK1P16157 1881 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 TCRBV5S1A1TA0A578 114 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 ZSCAN5CA6NGD5 496 aaPredicted RBP11.44□□□□□ -0.58
USP4-214ENST00000491791 H0YGN5 161 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 PSTPIP1O43586 416 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 SHOX2O60902 331 aaPredicted RBP11.44□□□□□ -0.58
USP4-214ENST00000491791 PHACTR2O75167 634 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 ECM2O94769 699 aaPredicted RBP11.44□□□□□ -0.58
USP4-214ENST00000491791 SNAI1O95863 264 aaPredicted RBP11.44□□□□□ -0.58
USP4-214ENST00000491791 CST3P01034 146 aaPredicted RBP11.44□□□□□ -0.58
USP4-214ENST00000491791 FAM153BP0C7A2 387 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 SRGAP2CP0DJJ0 459 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 CYP2C8P10632 490 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 MMP8P22894 467 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 MAPK4P31152 587 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 TNFSF9P41273 254 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 FCGRTP55899 365 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 GSCP56915 257 aaPredicted RBP11.44□□□□□ -0.58
USP4-214ENST00000491791 RNASE9P60153 205 aaKnown RBP11.44□□□□□ -0.58
USP4-214ENST00000491791 SKOR1P84550 965 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 DR1Q01658 176 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 TAP1Q03518 808 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 FAM110CQ1W6H9 321 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 FAM153CQ494X1 144 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 DUSP28Q4G0W2 176 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 CFAP58Q5T655 872 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 SEL1L2Q5TEA6 688 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 LRRC38Q5VT99 294 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 LMBRD2Q68DH5 695 aaPredicted RBP11.44□□□□□ -0.58
USP4-214ENST00000491791 IQSEC1Q6DN90 963 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 SYDE1Q6ZW31 735 aaPredicted RBP11.44□□□□□ -0.58
USP4-214ENST00000491791 ZNF410Q86VK4 478 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 TRIM50Q86XT4 487 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 RHPN2Q8IUC4 686 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 TTC39CQ8N584 583 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 CXorf38Q8TB03 319 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 ZNF606Q8WXB4 792 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 IFT81Q8WYA0 676 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 COPS5Q92905 334 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 CYFIP2Q96F07 1278 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 BCO2Q9BYV7 579 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 CDT1Q9H211 546 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 RNPEPQ9H4A4 650 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 HOMER3Q9NSC5 361 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 ZDHHC18Q9NUE0 388 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 PARP2Q9UGN5 583 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 AMACRQ9UHK6 382 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 FAM153AQ9UHL3 310 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 RASAL2Q9UJF2 1139 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms