RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 LRRC31Q6UY01 552 aa13.02□□□□□ -0.32
HDAC6-230ENST00000488543 LEKR1Q6ZMV7 388 aa13.02□□□□□ -0.32
HDAC6-230ENST00000488543 SND1Q7KZF4 910 aaKnown RBP eCLIP13.02□□□□□ -0.32
HDAC6-230ENST00000488543 ZNF410Q86VK4 478 aa13.02□□□□□ -0.32
HDAC6-230ENST00000488543 FAM212AQ96EL1 285 aa13.02□□□□□ -0.32
HDAC6-230ENST00000488543 DEFB118Q96PH6 123 aa13.02□□□□□ -0.32
HDAC6-230ENST00000488543 TMCO5BA8MYB1 307 aa13.02□□□□□ -0.33
HDAC6-230ENST00000488543 EIF4BP23588 611 aaKnown RBP13.02□□□□□ -0.33
HDAC6-230ENST00000488543 HOXA11P31270 313 aaPredicted RBP13.02□□□□□ -0.33
HDAC6-230ENST00000488543 CKAP4Q07065 602 aaKnown RBP13.02□□□□□ -0.33
HDAC6-230ENST00000488543 PTGISQ16647 500 aa13.02□□□□□ -0.33
HDAC6-230ENST00000488543 DNAJC21Q5F1R6 531 aaKnown RBP13.02□□□□□ -0.33
HDAC6-230ENST00000488543 CCNI2Q6ZMN8 369 aaPredicted RBP13.02□□□□□ -0.33
HDAC6-230ENST00000488543 EFCAB13Q8IY85 973 aa13.02□□□□□ -0.33
HDAC6-230ENST00000488543 TMEM130Q8N3G9 435 aa13.02□□□□□ -0.33
HDAC6-230ENST00000488543 DDX1Q92499 740 aaKnown RBP13.02□□□□□ -0.33
HDAC6-230ENST00000488543 GCOM2Q9BZD3 368 aaPredicted RBP13.02□□□□□ -0.33
HDAC6-230ENST00000488543 RNF208Q9H0X6 261 aa13.02□□□□□ -0.33
HDAC6-230ENST00000488543 PSD3Q9NYI0 1048 aa13.02□□□□□ -0.33
HDAC6-230ENST00000488543 RSPH14Q9UHP6 348 aa13.02□□□□□ -0.33
HDAC6-230ENST00000488543 UMODL1Q5DID0 1318 aa13.02□□□□□ -0.33
HDAC6-230ENST00000488543 ESYT3A0FGR9 886 aa13.01□□□□□ -0.33
HDAC6-230ENST00000488543 ERLIN2O94905 339 aa13.01□□□□□ -0.33
HDAC6-230ENST00000488543 TMEM253P0C7T8 217 aa13.01□□□□□ -0.33
HDAC6-230ENST00000488543 DARSP14868 501 aaKnown RBP13.01□□□□□ -0.33
HDAC6-230ENST00000488543 CYP11B1P15538 503 aa13.01□□□□□ -0.33
HDAC6-230ENST00000488543 ACO1P21399 889 aaKnown RBP13.01□□□□□ -0.33
HDAC6-230ENST00000488543 AP3M2P53677 418 aa13.01□□□□□ -0.33
HDAC6-230ENST00000488543 FMO1Q01740 532 aa13.01□□□□□ -0.33
HDAC6-230ENST00000488543 NCOA4Q13772 614 aa13.01□□□□□ -0.33
HDAC6-230ENST00000488543 SNX17Q15036 470 aa13.01□□□□□ -0.33
HDAC6-230ENST00000488543 SURF1Q15526 300 aa13.01□□□□□ -0.33
HDAC6-230ENST00000488543 WDR44Q5JSH3 913 aa13.01□□□□□ -0.33
HDAC6-230ENST00000488543 LRRC57Q8N9N7 239 aa13.01□□□□□ -0.33
HDAC6-230ENST00000488543 FAM81BQ96LP2 452 aa13.01□□□□□ -0.33
HDAC6-230ENST00000488543 OSBPL9Q96SU4 736 aa13.01□□□□□ -0.33
HDAC6-230ENST00000488543 MTMR12Q9C0I1 747 aa13.01□□□□□ -0.33
HDAC6-230ENST00000488543 NUB1Q9Y5A7 615 aa13.01□□□□□ -0.33
HDAC6-230ENST00000488543 A0A1W2PQ45 241 aaPredicted RBP13.01□□□□□ -0.33
HDAC6-230ENST00000488543 A0A1W2PQY0 241 aa13.01□□□□□ -0.33
HDAC6-230ENST00000488543 FTCDO95954 541 aa13.01□□□□□ -0.33
HDAC6-230ENST00000488543 CST3P01034 146 aaPredicted RBP13.01□□□□□ -0.33
HDAC6-230ENST00000488543 CALCAP01258 141 aa13.01□□□□□ -0.33
HDAC6-230ENST00000488543 CLTAP09496 248 aa13.01□□□□□ -0.33
HDAC6-230ENST00000488543 MCF2P10911 925 aa13.01□□□□□ -0.33
HDAC6-230ENST00000488543 PRLRP16471 622 aa13.01□□□□□ -0.33
HDAC6-230ENST00000488543 CATSPER4Q7RTX7 472 aa13.01□□□□□ -0.33
HDAC6-230ENST00000488543 SERINC5Q86VE9 423 aa13.01□□□□□ -0.33
HDAC6-230ENST00000488543 TPCN2Q8NHX9 752 aa13.01□□□□□ -0.33
HDAC6-230ENST00000488543 ARHGEF26Q96DR7 871 aa13.01□□□□□ -0.33
HDAC6-230ENST00000488543 GLT1D1Q96MS3 346 aa13.01□□□□□ -0.33
HDAC6-230ENST00000488543 TRPV6Q9H1D0 765 aa13.01□□□□□ -0.33
HDAC6-230ENST00000488543 ISCUQ9H1K1 167 aa13.01□□□□□ -0.33
HDAC6-230ENST00000488543 GOLPH3Q9H4A6 298 aa13.01□□□□□ -0.33
HDAC6-230ENST00000488543 SEPT11Q9NVA2 429 aaKnown RBP13.01□□□□□ -0.33
HDAC6-230ENST00000488543 RRP15Q9Y3B9 282 aaKnown RBP13.01□□□□□ -0.33
HDAC6-230ENST00000488543 A0A1B0GUA9 196 aa13□□□□□ -0.33
HDAC6-230ENST00000488543 MYO1CO00159 1063 aa13□□□□□ -0.33
HDAC6-230ENST00000488543 B4GALT4O60513 344 aa13□□□□□ -0.33
HDAC6-230ENST00000488543 CHRNA1P02708 482 aa13□□□□□ -0.33
HDAC6-230ENST00000488543 MMEP08473 750 aa13□□□□□ -0.33
HDAC6-230ENST00000488543 CXCL8P10145 99 aa13□□□□□ -0.33
HDAC6-230ENST00000488543 NOP14P78316 857 aaKnown RBP13□□□□□ -0.33
HDAC6-230ENST00000488543 CUL2Q13617 745 aa13□□□□□ -0.33
HDAC6-230ENST00000488543 MEI1Q5TIA1 1274 aa13□□□□□ -0.33
HDAC6-230ENST00000488543 TAF2Q6P1X5 1199 aa13□□□□□ -0.33
HDAC6-230ENST00000488543 UBR7Q8N806 425 aa13□□□□□ -0.33
HDAC6-230ENST00000488543 TSEN2Q8NCE0 465 aaKnown RBP13□□□□□ -0.33
HDAC6-230ENST00000488543 SPATA4Q8NEY3 305 aa13□□□□□ -0.33
HDAC6-230ENST00000488543 CXCL16Q9H2A7 254 aa13□□□□□ -0.33
HDAC6-230ENST00000488543 RBM12Q9NTZ6 932 aaKnown RBP13□□□□□ -0.33
HDAC6-230ENST00000488543 HYOU1Q9Y4L1 999 aa13□□□□□ -0.33
HDAC6-230ENST00000488543 ASS1P00966 412 aaKnown RBP13□□□□□ -0.33
HDAC6-230ENST00000488543 CCL5P13501 91 aa13□□□□□ -0.33
HDAC6-230ENST00000488543 THPOP40225 353 aa13□□□□□ -0.33
HDAC6-230ENST00000488543 CDR2Q01850 454 aa13□□□□□ -0.33
HDAC6-230ENST00000488543 EIF2AQ9BY44 585 aaKnown RBP13□□□□□ -0.33
HDAC6-230ENST00000488543 CELF4Q9BZC1 486 aaKnown RBP13□□□□□ -0.33
HDAC6-230ENST00000488543 PAK6Q9NQU5 681 aaPredicted RBP13□□□□□ -0.33
HDAC6-230ENST00000488543 RNF19AQ9NV58 838 aa13□□□□□ -0.33
HDAC6-230ENST00000488543 HES2Q9Y543 173 aa13□□□□□ -0.33
HDAC6-230ENST00000488543 CDY2AQ9Y6F7 541 aa13□□□□□ -0.33
HDAC6-230ENST00000488543 RALGAPA2Q2PPJ7 1873 aa13□□□□□ -0.33
HDAC6-230ENST00000488543 ANKRD62A6NC57 917 aa12.99□□□□□ -0.33
HDAC6-230ENST00000488543 STAG3L1P0CL83 205 aa12.99□□□□□ -0.33
HDAC6-230ENST00000488543 KRT5P13647 590 aa12.99□□□□□ -0.33
HDAC6-230ENST00000488543 LBX1P52954 281 aa12.99□□□□□ -0.33
HDAC6-230ENST00000488543 TRADDQ15628 312 aa12.99□□□□□ -0.33
HDAC6-230ENST00000488543 DUOXA2Q1HG44 320 aa12.99□□□□□ -0.33
HDAC6-230ENST00000488543 SLFN11Q7Z7L1 901 aa12.99□□□□□ -0.33
HDAC6-230ENST00000488543 NME8Q8N427 588 aa12.99□□□□□ -0.33
HDAC6-230ENST00000488543 RFFLQ8WZ73 363 aa12.99□□□□□ -0.33
HDAC6-230ENST00000488543 THAP2Q9H0W7 228 aa12.99□□□□□ -0.33
HDAC6-230ENST00000488543 RPF1Q9H9Y2 349 aaKnown RBP12.99□□□□□ -0.33
HDAC6-230ENST00000488543 STARD7Q9NQZ5 370 aa12.99□□□□□ -0.33
HDAC6-230ENST00000488543 CNTN6Q9UQ52 1028 aa12.99□□□□□ -0.33
HDAC6-230ENST00000488543 NOC2LQ9Y3T9 749 aaKnown RBP12.99□□□□□ -0.33
HDAC6-230ENST00000488543 CITO14578 2027 aa12.99□□□□□ -0.33
HDAC6-230ENST00000488543 LAMA2P24043 3122 aaKnown RBP12.99□□□□□ -0.33
HDAC6-230ENST00000488543 MOXD2PA6NHM9 499 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms