RNA–Protein interactions for RNA: ENST00000488426.5

NELFE-209, Transcript of negative elongation factor complex member E, humanhuman

TSL 5

Gene NELFE, Length 1,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-209ENST00000488426 TMEM191BP0C7N4 346 aa13.65□□□□□ -0.22
NELFE-209ENST00000488426 CXCL8P10145 99 aa13.65□□□□□ -0.22
NELFE-209ENST00000488426 TBXAS1P24557 533 aaPredicted RBP13.65□□□□□ -0.22
NELFE-209ENST00000488426 GRM5P41594 1212 aa13.65□□□□□ -0.22
NELFE-209ENST00000488426 ALKBH5Q6P6C2 394 aaKnown RBP13.65□□□□□ -0.22
NELFE-209ENST00000488426 NOTUMQ6P988 496 aa13.65□□□□□ -0.22
NELFE-209ENST00000488426 SLC27A1Q6PCB7 646 aa13.65□□□□□ -0.22
NELFE-209ENST00000488426 TRAPPC11Q7Z392 1133 aa13.65□□□□□ -0.22
NELFE-209ENST00000488426 SLC35F6Q8N357 371 aa13.65□□□□□ -0.22
NELFE-209ENST00000488426 SLC30A5Q8TAD4 765 aa13.65□□□□□ -0.22
NELFE-209ENST00000488426 SECISBP2LQ93073 1101 aaKnown RBP13.65□□□□□ -0.22
NELFE-209ENST00000488426 TATDN2Q93075 761 aa13.65□□□□□ -0.22
NELFE-209ENST00000488426 PI4K2AQ9BTU6 479 aa13.65□□□□□ -0.22
NELFE-209ENST00000488426 MTMR12Q9C0I1 747 aa13.65□□□□□ -0.22
NELFE-209ENST00000488426 L2HGDHQ9H9P8 463 aa13.65□□□□□ -0.22
NELFE-209ENST00000488426 CDHR5Q9HBB8 845 aa13.65□□□□□ -0.22
NELFE-209ENST00000488426 INTUQ9ULD6 942 aa13.65□□□□□ -0.22
NELFE-209ENST00000488426 TFR2Q9UP52 801 aa13.65□□□□□ -0.22
NELFE-209ENST00000488426 GINS2Q9Y248 185 aa13.65□□□□□ -0.22
NELFE-209ENST00000488426 TANC1Q9C0D5 1861 aa13.65□□□□□ -0.23
NELFE-209ENST00000488426 CITO14578 2027 aa13.65□□□□□ -0.23
NELFE-209ENST00000488426 CTAGE9A4FU28 777 aa13.64□□□□□ -0.23
NELFE-209ENST00000488426 BTNL10A8MVZ5 291 aa13.64□□□□□ -0.23
NELFE-209ENST00000488426 DDX3XO00571 662 aaKnown RBP eCLIP13.64□□□□□ -0.234e-20■■■■■ 76.5
NELFE-209ENST00000488426 TRANK1O15050 2925 aa13.64□□□□□ -0.23
NELFE-209ENST00000488426 ATP2A2P16615 1042 aaKnown RBP13.64□□□□□ -0.23
NELFE-209ENST00000488426 THPOP40225 353 aa13.64□□□□□ -0.23
NELFE-209ENST00000488426 OSTNP61366 133 aa13.64□□□□□ -0.23
NELFE-209ENST00000488426 NOP14P78316 857 aaKnown RBP13.64□□□□□ -0.23
NELFE-209ENST00000488426 RSPH3Q86UC2 560 aa13.64□□□□□ -0.23
NELFE-209ENST00000488426 NT5DC4Q86YG4 428 aa13.64□□□□□ -0.23
NELFE-209ENST00000488426 CD302Q8IX05 232 aa13.64□□□□□ -0.23
NELFE-209ENST00000488426 EFCAB13Q8IY85 973 aa13.64□□□□□ -0.23
NELFE-209ENST00000488426 RNF10Q8N5U6 811 aaKnown RBP13.64□□□□□ -0.23
NELFE-209ENST00000488426 OLIG1Q8TAK6 271 aa13.64□□□□□ -0.23
NELFE-209ENST00000488426 FAM84AQ96KN4 292 aa13.64□□□□□ -0.23
NELFE-209ENST00000488426 PRDM12Q9H4Q4 367 aa13.64□□□□□ -0.23
NELFE-209ENST00000488426 MUC3AQ02505 3323 aa13.64□□□□□ -0.23
NELFE-209ENST00000488426 PTPRSQ13332 1948 aa13.64□□□□□ -0.23
NELFE-209ENST00000488426 ASS1P00966 412 aaKnown RBP13.63□□□□□ -0.23
NELFE-209ENST00000488426 CXCL10P02778 98 aa13.63□□□□□ -0.23
NELFE-209ENST00000488426 CTSHP09668 335 aa13.63□□□□□ -0.23
NELFE-209ENST00000488426 TNFAIP3P21580 790 aa13.63□□□□□ -0.23
NELFE-209ENST00000488426 HOXA11P31270 313 aaPredicted RBP13.63□□□□□ -0.23
NELFE-209ENST00000488426 DEFB103AP81534 67 aa13.63□□□□□ -0.23
NELFE-209ENST00000488426 TFAMQ00059 246 aaKnown RBP13.63□□□□□ -0.23
NELFE-209ENST00000488426 CUL2Q13617 745 aa13.63□□□□□ -0.23
NELFE-209ENST00000488426 TUBB2AQ13885 445 aa13.63□□□□□ -0.23
NELFE-209ENST00000488426 ADGRE1Q14246 886 aa13.63□□□□□ -0.23
NELFE-209ENST00000488426 SGSM1Q2NKQ1 1148 aa13.63□□□□□ -0.23
NELFE-209ENST00000488426 RPAINQ86UA6 219 aa13.63□□□□□ -0.23
NELFE-209ENST00000488426 TMEM192Q8IY95 271 aa13.63□□□□□ -0.23
NELFE-209ENST00000488426 TRIM58Q8NG06 486 aa13.63□□□□□ -0.23
NELFE-209ENST00000488426 LNX1Q8TBB1 728 aaPredicted RBP13.63□□□□□ -0.23
NELFE-209ENST00000488426 EPS8L1Q8TE68 723 aa13.63□□□□□ -0.23
NELFE-209ENST00000488426 ACAP3Q96P50 834 aa13.63□□□□□ -0.23
NELFE-209ENST00000488426 NAPGQ99747 312 aaPredicted RBP13.63□□□□□ -0.23
NELFE-209ENST00000488426 AGPAT1Q99943 283 aa13.63□□□□□ -0.23
NELFE-209ENST00000488426 TUBB2BQ9BVA1 445 aa13.63□□□□□ -0.23
NELFE-209ENST00000488426 CCDC94Q9BW85 323 aaPredicted RBP13.63□□□□□ -0.23
NELFE-209ENST00000488426 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.63□□□□□ -0.233e-9■■■■■ 65.2
NELFE-209ENST00000488426 LACTBL1A8MY62 500 aa13.63□□□□□ -0.23
NELFE-209ENST00000488426 M0QZ92 97 aa13.63□□□□□ -0.23
NELFE-209ENST00000488426 TACC1O75410 805 aa13.63□□□□□ -0.23
NELFE-209ENST00000488426 URI1O94763 535 aaPredicted RBP13.63□□□□□ -0.23
NELFE-209ENST00000488426 PFKMP08237 780 aa13.63□□□□□ -0.23
NELFE-209ENST00000488426 FGFR4P22455 802 aa13.63□□□□□ -0.23
NELFE-209ENST00000488426 RFC2P35250 354 aa13.63□□□□□ -0.23
NELFE-209ENST00000488426 USP8P40818 1118 aa13.63□□□□□ -0.23
NELFE-209ENST00000488426 TRPC3Q13507 836 aa13.63□□□□□ -0.23
NELFE-209ENST00000488426 GLYCTKQ8IVS8 523 aa13.63□□□□□ -0.23
NELFE-209ENST00000488426 TAF4BQ92750 862 aa13.63□□□□□ -0.23
NELFE-209ENST00000488426 FAXDC2Q96IV6 333 aa13.63□□□□□ -0.23
NELFE-209ENST00000488426 CELF4Q9BZC1 486 aaKnown RBP13.63□□□□□ -0.23
NELFE-209ENST00000488426 CERS4Q9HA82 394 aa13.63□□□□□ -0.23
NELFE-209ENST00000488426 PLEKHA5Q9HAU0 1116 aa13.63□□□□□ -0.23
NELFE-209ENST00000488426 APOBEC3GQ9HC16 384 aaKnown RBP13.63□□□□□ -0.23
NELFE-209ENST00000488426 NOCTQ9UK39 431 aaKnown RBP13.63□□□□□ -0.23
NELFE-209ENST00000488426 C2CD2Q9Y426 696 aa13.63□□□□□ -0.23
NELFE-209ENST00000488426 DUSP10Q9Y6W6 482 aa13.63□□□□□ -0.23
NELFE-209ENST00000488426 MACROD2A1Z1Q3 448 aa13.62□□□□□ -0.23
NELFE-209ENST00000488426 RFXAPO00287 272 aa13.62□□□□□ -0.23
NELFE-209ENST00000488426 CYP26A1O43174 497 aa13.62□□□□□ -0.23
NELFE-209ENST00000488426 NPTXRO95502 500 aa13.62□□□□□ -0.23
NELFE-209ENST00000488426 H2AFZP0C0S5 128 aa13.62□□□□□ -0.23
NELFE-209ENST00000488426 GTF2F1P35269 517 aaKnown RBP eCLIP13.62□□□□□ -0.23
NELFE-209ENST00000488426 PDE6CP51160 858 aa13.62□□□□□ -0.23
NELFE-209ENST00000488426 BPIFB4P59827 614 aa13.62□□□□□ -0.23
NELFE-209ENST00000488426 MRPS6P82932 125 aaKnown RBP13.62□□□□□ -0.23
NELFE-209ENST00000488426 SLC10A6Q3KNW5 377 aa13.62□□□□□ -0.23
NELFE-209ENST00000488426 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.62□□□□□ -0.23
NELFE-209ENST00000488426 H2AFVQ71UI9 128 aa13.62□□□□□ -0.23
NELFE-209ENST00000488426 USP38Q8NB14 1042 aa13.62□□□□□ -0.23
NELFE-209ENST00000488426 DBF4BQ8NFT6 615 aa13.62□□□□□ -0.23
NELFE-209ENST00000488426 TMEM40Q8WWA1 233 aa13.62□□□□□ -0.23
NELFE-209ENST00000488426 ALS2CR12Q96Q35 445 aa13.62□□□□□ -0.23
NELFE-209ENST00000488426 TRPV2Q9Y5S1 764 aa13.62□□□□□ -0.23
NELFE-209ENST00000488426 ANO9A1A5B4 782 aa13.61□□□□□ -0.23
NELFE-209ENST00000488426 LCHNA4D1U4 455 aa13.61□□□□□ -0.23
NELFE-209ENST00000488426 MEFVO15553 781 aaPredicted RBP13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms