RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 KCNK16Q96T55 309 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 L1RE1Q9UN81 338 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 A0A087X0T9 212 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 KLHL2O95198 593 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 FAM228BP0C875 321 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 MTBPQ96DY7 904 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 ZSWIM1Q9BR11 485 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 KIF17Q9P2E2 1029 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 ATF5Q9Y2D1 282 aaPredicted RBP17.25■□□□□ 0.35
COL7A1-210ENST00000487017 SLC37A4O43826 429 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 SNRPAP09012 282 aaKnown RBP17.25■□□□□ 0.35
COL7A1-210ENST00000487017 HNRNPH1P31943 449 aaKnown RBP17.25■□□□□ 0.35
COL7A1-210ENST00000487017 HERVK_113P62684 666 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 BAATQ14032 418 aaPredicted RBP17.25■□□□□ 0.35
COL7A1-210ENST00000487017 ARHGEF6Q15052 776 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 TTC39BQ5VTQ0 682 aaPredicted RBP17.25■□□□□ 0.35
COL7A1-210ENST00000487017 BTBD8Q5XKL5 378 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 PPP1R36Q96LQ0 422 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 EGFL8Q99944 293 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 PABPC3Q9H361 631 aaKnown RBP17.25■□□□□ 0.35
COL7A1-210ENST00000487017 CAPN6Q9Y6Q1 641 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 MAPK7Q13164 816 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 NBPF20Q3BBV1 942 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 PLA2G4FQ68DD2 849 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 AFG1LQ8WV93 481 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 DNAJC9Q8WXX5 260 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 ASPSCR1Q9BZE9 553 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 RSAD1Q9HA92 442 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 RGS7P49802 495 aa17.24■□□□□ 0.35
COL7A1-210ENST00000487017 MANSC1Q9H8J5 431 aa17.24■□□□□ 0.35
COL7A1-210ENST00000487017 DUSP10Q9Y6W6 482 aa17.24■□□□□ 0.35
COL7A1-210ENST00000487017 C3orf70A6NLC5 250 aaPredicted RBP17.24■□□□□ 0.35
COL7A1-210ENST00000487017 PSMD3O43242 534 aa17.24■□□□□ 0.35
COL7A1-210ENST00000487017 DNAJC6O75061 913 aa17.24■□□□□ 0.35
COL7A1-210ENST00000487017 SYF2O95926 243 aaKnown RBP17.24■□□□□ 0.35
COL7A1-210ENST00000487017 PON1P27169 355 aa17.24■□□□□ 0.35
COL7A1-210ENST00000487017 HMGCS2P54868 508 aa17.24■□□□□ 0.35
COL7A1-210ENST00000487017 SH3GL3Q99963 347 aa17.24■□□□□ 0.35
COL7A1-210ENST00000487017 TEKT2Q9UIF3 430 aa17.24■□□□□ 0.35
COL7A1-210ENST00000487017 GTF3C4Q9UKN8 822 aa17.24■□□□□ 0.35
COL7A1-210ENST00000487017 AURKCQ9UQB9 309 aa17.24■□□□□ 0.35
COL7A1-210ENST00000487017 KIAA1210Q9ULL0 1709 aa17.24■□□□□ 0.35
COL7A1-210ENST00000487017 POLRMTO00411 1230 aaKnown RBP17.24■□□□□ 0.35
COL7A1-210ENST00000487017 NEMP1O14524 444 aa17.24■□□□□ 0.35
COL7A1-210ENST00000487017 EXTL3O43909 919 aa17.24■□□□□ 0.35
COL7A1-210ENST00000487017 IFNA8P32881 189 aa17.24■□□□□ 0.35
COL7A1-210ENST00000487017 ATP6V1E1P36543 226 aa17.24■□□□□ 0.35
COL7A1-210ENST00000487017 INPP5AQ14642 412 aa17.24■□□□□ 0.35
COL7A1-210ENST00000487017 TTI2Q6NXR4 508 aa17.24■□□□□ 0.35
COL7A1-210ENST00000487017 FEZF2Q8TBJ5 459 aa17.24■□□□□ 0.35
COL7A1-210ENST00000487017 SEPT8Q92599 483 aa17.24■□□□□ 0.35
COL7A1-210ENST00000487017 NR1H4Q96RI1 486 aaPredicted RBP17.24■□□□□ 0.35
COL7A1-210ENST00000487017 THTPAQ9BU02 230 aa17.24■□□□□ 0.35
COL7A1-210ENST00000487017 ASB14A6NK59 587 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 RALAP11233 206 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 KCNA3P22001 575 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 CYTH1Q15438 398 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 CDKAL1Q5VV42 579 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 C16orf89Q6UX73 402 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 PPIL6Q8IXY8 311 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 LRRC34Q8IZ02 419 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 SPATA18Q8TC71 538 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 AGAP3Q96P47 875 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 AGPAT3Q9NRZ7 376 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 IQGAP1P46940 1657 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 C1orf167Q5SNV9 1468 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 ANGPT2O15123 496 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 DAB2IPQ5VWQ8 1189 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 ZMAT2Q96NC0 199 aaKnown RBP17.23■□□□□ 0.35
COL7A1-210ENST00000487017 SALL3Q9BXA9 1300 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 TMCC1O94876 653 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 KCNA2P16389 499 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 CYP11B2P19099 503 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 GEMIN4P57678 1058 aaKnown RBP17.23■□□□□ 0.35
COL7A1-210ENST00000487017 LBRQ14739 615 aaKnown RBP17.23■□□□□ 0.35
COL7A1-210ENST00000487017 UGP2Q16851 508 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 POTEAQ6S8J7 498 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 MYCBPAPQ8TBZ2 947 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 ASAP3Q8TDY4 903 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 KLF6Q99612 283 aaPredicted RBP17.23■□□□□ 0.35
COL7A1-210ENST00000487017 MOV10L1Q9BXT6 1211 aaKnown RBP17.23■□□□□ 0.35
COL7A1-210ENST00000487017 SNX9Q9Y5X1 595 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 IGSF9BQ9UPX0 1349 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 B2RBV5 119 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 CST8O60676 142 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 RECQLP46063 649 aaPredicted RBP17.23■□□□□ 0.35
COL7A1-210ENST00000487017 TMEM132DQ14C87 1099 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 ACAD10Q6JQN1 1059 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 TMEM154Q6P9G4 183 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 CXorf56Q9H5V9 222 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 TMBIM4Q9HC24 238 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 KBTBD4Q9NVX7 518 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 NR3C2P08235 984 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 RFC5P40937 340 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 FBXW4P57775 412 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 COG2Q14746 738 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 VCPKMTQ9H867 229 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 ARHGAP26Q9UNA1 814 aa17.23■□□□□ 0.35
COL7A1-210ENST00000487017 GPR75-ASB3A0A0A6YYF3 556 aa17.22■□□□□ 0.35
COL7A1-210ENST00000487017 PRKCEQ02156 737 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms