RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 OGTO15294 1046 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 POLR2DO15514 142 aaKnown RBP6.24□□□□□ -1.41
CUX1-208ENST00000485792 CLDN3O15551 220 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 TGFB1I1O43294 461 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 HCRTO43612 131 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 N4BP1O75113 896 aaKnown RBP6.24□□□□□ -1.41
CUX1-208ENST00000485792 ZC3H11AO75152 810 aaKnown RBP eCLIP6.24□□□□□ -1.41
CUX1-208ENST00000485792 GADD45BO75293 160 aaPredicted RBP6.24□□□□□ -1.41
CUX1-208ENST00000485792 SOD2P04179 222 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 SSBP05455 408 aaKnown RBP eCLIP6.24□□□□□ -1.41
CUX1-208ENST00000485792 MYL1P05976 194 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 THP07101 528 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 NFICP08651 508 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 WEE2P0C1S8 567 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 EPCAMP16422 314 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 CYP3A5P20815 502 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 BMP6P22004 513 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 FGFR3P22607 806 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 LRPAP1P30533 357 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 TXLNAP40222 546 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 NDUFA8P51970 172 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 OSTNP61366 133 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 KRT85P78386 507 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 NUCB2P80303 420 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 KRT17Q04695 432 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 SNW1Q13573 536 aaKnown RBP6.24□□□□□ -1.41
CUX1-208ENST00000485792 ALCAMQ13740 583 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 MRPL58Q14197 206 aaKnown RBP6.24□□□□□ -1.41
CUX1-208ENST00000485792 BECN1Q14457 450 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 NOLC1Q14978 699 aaKnown RBP eCLIP6.24□□□□□ -1.41
CUX1-208ENST00000485792 SMAD2Q15796 467 aaKnown RBP6.24□□□□□ -1.41
CUX1-208ENST00000485792 CLUL1Q15846 466 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 ENOX2Q16206 610 aaKnown RBP6.24□□□□□ -1.41
CUX1-208ENST00000485792 BMT2Q1RMZ1 405 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 PLPP4Q5VZY2 271 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 ELOA2Q8IYF1 753 aaPredicted RBP6.24□□□□□ -1.41
CUX1-208ENST00000485792 THNSL1Q8IYQ7 743 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 HACE1Q8IYU2 909 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 MYCT1Q8N699 235 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 SMRP1Q8NCR6 262 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 SPATA20Q8TB22 786 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 URGCPQ8TCY9 931 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 ELMO3Q96BJ8 720 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 DHX58Q96C10 678 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 TMEM169Q96HH4 297 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 FBXL18Q96ME1 805 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 ADPGKQ9BRR6 497 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 CBWD1Q9BRT8 395 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 HERC2P3Q9BVR0 1158 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 GBP3Q9H0R5 595 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 SMOC2Q9H3U7 446 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 TBC1D7Q9P0N9 293 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 FNIP2Q9P278 1114 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 USP25Q9UHP3 1055 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 SERTAD1Q9UHV2 236 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 PUF60Q9UHX1 559 aaKnown RBP6.24□□□□□ -1.41
CUX1-208ENST00000485792 ADAM28Q9UKQ2 775 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 KCNH3Q9ULD8 1083 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 FAN1Q9Y2M0 1017 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 GDAQ9Y2T3 454 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 PRG3Q9Y2Y8 225 aaPredicted RBP6.24□□□□□ -1.41
CUX1-208ENST00000485792 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.24□□□□□ -1.41
CUX1-208ENST00000485792 KIAA1549LQ6ZVL6 1849 aa6.24□□□□□ -1.41
CUX1-208ENST00000485792 MYO18AQ92614 2054 aaKnown RBP6.23□□□□□ -1.41
CUX1-208ENST00000485792 ANO9A1A5B4 782 aa6.23□□□□□ -1.41
CUX1-208ENST00000485792 K7ENM7 598 aa6.23□□□□□ -1.41
CUX1-208ENST00000485792 M0QZQ0 153 aa6.23□□□□□ -1.41
CUX1-208ENST00000485792 PIRO00625 290 aa6.23□□□□□ -1.41
CUX1-208ENST00000485792 EIF3DO15371 548 aaKnown RBP eCLIP6.23□□□□□ -1.41
CUX1-208ENST00000485792 CLASP2O75122 1294 aaKnown RBP6.23□□□□□ -1.41
CUX1-208ENST00000485792 LRRN2O75325 713 aa6.23□□□□□ -1.41
CUX1-208ENST00000485792 FAM13AO94988 1023 aa6.23□□□□□ -1.41
CUX1-208ENST00000485792 HSP90AA1P07900 732 aaKnown RBP6.23□□□□□ -1.41
CUX1-208ENST00000485792 CLTAP09496 248 aa6.23□□□□□ -1.41
CUX1-208ENST00000485792 RPL17P18621 184 aaKnown RBP6.23□□□□□ -1.41
CUX1-208ENST00000485792 GARTP22102 1010 aa6.23□□□□□ -1.41
CUX1-208ENST00000485792 RPL9P32969 192 aaKnown RBP6.23□□□□□ -1.41
CUX1-208ENST00000485792 STAT6P42226 847 aa6.23□□□□□ -1.41
CUX1-208ENST00000485792 BRCC3P46736 316 aa6.23□□□□□ -1.41
CUX1-208ENST00000485792 NRIP1P48552 1158 aa6.23□□□□□ -1.41
CUX1-208ENST00000485792 CLCN4P51793 760 aa6.23□□□□□ -1.41
CUX1-208ENST00000485792 SMC1AQ14683 1233 aaKnown RBP6.23□□□□□ -1.41
CUX1-208ENST00000485792 CBX2Q14781 532 aaPredicted RBP6.23□□□□□ -1.41
CUX1-208ENST00000485792 KYAT1Q16773 422 aa6.23□□□□□ -1.41
CUX1-208ENST00000485792 AAK1Q2M2I8 961 aa6.23□□□□□ -1.41
CUX1-208ENST00000485792 ZNF568Q3ZCX4 644 aa6.23□□□□□ -1.41
CUX1-208ENST00000485792 C1orf220Q5T0J3 134 aa6.23□□□□□ -1.41
CUX1-208ENST00000485792 L1TD1Q5T7N2 865 aaKnown RBP6.23□□□□□ -1.41
CUX1-208ENST00000485792 SLFN12LQ6IEE8 588 aa6.23□□□□□ -1.41
CUX1-208ENST00000485792 DCLRE1AQ6PJP8 1040 aa6.23□□□□□ -1.41
CUX1-208ENST00000485792 PRSS55Q6UWB4 352 aaPredicted RBP6.23□□□□□ -1.41
CUX1-208ENST00000485792 CLEC17AQ6ZS10 378 aa6.23□□□□□ -1.41
CUX1-208ENST00000485792 UNC13DQ70J99 1090 aa6.23□□□□□ -1.41
CUX1-208ENST00000485792 LIMS2Q7Z4I7 341 aa6.23□□□□□ -1.41
CUX1-208ENST00000485792 APBB1IPQ7Z5R6 666 aaPredicted RBP6.23□□□□□ -1.41
CUX1-208ENST00000485792 RBM23Q86U06 439 aaKnown RBP6.23□□□□□ -1.41
CUX1-208ENST00000485792 FAM178BQ8IXR5 827 aa6.23□□□□□ -1.41
CUX1-208ENST00000485792 C12orf56Q8IXR9 622 aa6.23□□□□□ -1.41
CUX1-208ENST00000485792 VPS52Q8N1B4 723 aa6.23□□□□□ -1.41
CUX1-208ENST00000485792 LNX1Q8TBB1 728 aaPredicted RBP6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms