RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 SMAD2Q15796 467 aaKnown RBP13.22□□□□□ -0.29
PTPRF-213ENST00000481019 ZCWPW2Q504Y3 356 aa13.22□□□□□ -0.29
PTPRF-213ENST00000481019 LRSAM1Q6UWE0 723 aa13.22□□□□□ -0.29
PTPRF-213ENST00000481019 TMC5Q6UXY8 1006 aa13.22□□□□□ -0.29
PTPRF-213ENST00000481019 HS2ST1Q7LGA3 356 aa13.22□□□□□ -0.29
PTPRF-213ENST00000481019 GPR65Q8IYL9 337 aa13.22□□□□□ -0.29
PTPRF-213ENST00000481019 ZNF516Q92618 1163 aa13.22□□□□□ -0.29
PTPRF-213ENST00000481019 CCDC47Q96A33 483 aaKnown RBP13.22□□□□□ -0.29
PTPRF-213ENST00000481019 TSPAN18Q96SJ8 248 aa13.22□□□□□ -0.29
PTPRF-213ENST00000481019 UHRF1Q96T88 793 aaPredicted RBP13.22□□□□□ -0.29
PTPRF-213ENST00000481019 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.22□□□□□ -0.29
PTPRF-213ENST00000481019 MAN1B1Q9UKM7 699 aa13.22□□□□□ -0.29
PTPRF-213ENST00000481019 SSX2IPQ9Y2D8 614 aa13.22□□□□□ -0.29
PTPRF-213ENST00000481019 CDY1Q9Y6F8 540 aa13.22□□□□□ -0.29
PTPRF-213ENST00000481019 C2orf16Q68DN1 1984 aa13.21□□□□□ -0.29
PTPRF-213ENST00000481019 MTCL1Q9Y4B5 1905 aaKnown RBP13.21□□□□□ -0.29
PTPRF-213ENST00000481019 SYN3O14994 580 aa13.21□□□□□ -0.29
PTPRF-213ENST00000481019 KIAA0391O15091 583 aaKnown RBP13.21□□□□□ -0.29
PTPRF-213ENST00000481019 GLUD1P00367 558 aa13.21□□□□□ -0.29
PTPRF-213ENST00000481019 NR3C1P04150 777 aa13.21□□□□□ -0.29
PTPRF-213ENST00000481019 ITGB3P05106 788 aa13.21□□□□□ -0.29
PTPRF-213ENST00000481019 PRCPP42785 496 aa13.21□□□□□ -0.29
PTPRF-213ENST00000481019 CDR1P51861 262 aa13.21□□□□□ -0.29
PTPRF-213ENST00000481019 PMS1P54277 932 aaKnown RBP13.21□□□□□ -0.29
PTPRF-213ENST00000481019 SNRPFP62306 86 aaKnown RBP13.21□□□□□ -0.29
PTPRF-213ENST00000481019 PSMD6Q15008 389 aa13.21□□□□□ -0.29
PTPRF-213ENST00000481019 CAMK4Q16566 473 aa13.21□□□□□ -0.29
PTPRF-213ENST00000481019 RBM43Q6ZSC3 357 aaKnown RBP13.21□□□□□ -0.29
PTPRF-213ENST00000481019 PPFIBP1Q86W92 1011 aa13.21□□□□□ -0.29
PTPRF-213ENST00000481019 GUF1Q8N442 669 aaKnown RBP13.21□□□□□ -0.29
PTPRF-213ENST00000481019 KHSRPQ92945 711 aaKnown RBP eCLIP13.21□□□□□ -0.29
PTPRF-213ENST00000481019 CCDC127Q96BQ5 260 aa13.21□□□□□ -0.29
PTPRF-213ENST00000481019 ZNF707Q96C28 371 aaPredicted RBP13.21□□□□□ -0.29
PTPRF-213ENST00000481019 SENP8Q96LD8 212 aa13.21□□□□□ -0.29
PTPRF-213ENST00000481019 MFSD14AQ96MC6 490 aa13.21□□□□□ -0.29
PTPRF-213ENST00000481019 TMEM209Q96SK2 561 aa13.21□□□□□ -0.29
PTPRF-213ENST00000481019 RTP3Q9BQQ7 232 aa13.21□□□□□ -0.29
PTPRF-213ENST00000481019 INTS13Q9NVM9 706 aa13.21□□□□□ -0.29
PTPRF-213ENST00000481019 KIAA1468Q9P260 1216 aa13.21□□□□□ -0.29
PTPRF-213ENST00000481019 FBXL5Q9UKA1 691 aa13.21□□□□□ -0.29
PTPRF-213ENST00000481019 AGAP1Q9UPQ3 857 aa13.21□□□□□ -0.29
PTPRF-213ENST00000481019 BACE2Q9Y5Z0 518 aa13.21□□□□□ -0.29
PTPRF-213ENST00000481019 SYCE3A1L190 88 aa13.2□□□□□ -0.3
PTPRF-213ENST00000481019 FSD2A1L4K1 749 aa13.2□□□□□ -0.3
PTPRF-213ENST00000481019 DLL1O00548 723 aa13.2□□□□□ -0.3
PTPRF-213ENST00000481019 PDXKO00764 312 aa13.2□□□□□ -0.3
PTPRF-213ENST00000481019 XPOTO43592 962 aaKnown RBP13.2□□□□□ -0.3
PTPRF-213ENST00000481019 TRAPPC3O43617 180 aa13.2□□□□□ -0.3
PTPRF-213ENST00000481019 EXOC3O60645 756 aa13.2□□□□□ -0.3
PTPRF-213ENST00000481019 VNN2O95498 520 aa13.2□□□□□ -0.3
PTPRF-213ENST00000481019 OR4Q2P0C623 313 aa13.2□□□□□ -0.3
PTPRF-213ENST00000481019 DLATP10515 647 aaKnown RBP13.2□□□□□ -0.3
PTPRF-213ENST00000481019 CD44P16070 742 aaKnown RBP13.2□□□□□ -0.3
PTPRF-213ENST00000481019 ARPP19P56211 112 aa13.2□□□□□ -0.3
PTPRF-213ENST00000481019 DLG4P78352 724 aa13.2□□□□□ -0.3
PTPRF-213ENST00000481019 ROR1Q01973 937 aa13.2□□□□□ -0.3
PTPRF-213ENST00000481019 ZP2Q05996 745 aa13.2□□□□□ -0.3
PTPRF-213ENST00000481019 RAB33AQ14088 237 aa13.2□□□□□ -0.3
PTPRF-213ENST00000481019 PUS10Q3MIT2 529 aaKnown RBP13.2□□□□□ -0.3
PTPRF-213ENST00000481019 C1orf220Q5T0J3 134 aa13.2□□□□□ -0.3
PTPRF-213ENST00000481019 DSTYKQ6XUX3 929 aa13.2□□□□□ -0.3
PTPRF-213ENST00000481019 ANKS3Q6ZW76 656 aa13.2□□□□□ -0.3
PTPRF-213ENST00000481019 SLC9A9Q8IVB4 645 aa13.2□□□□□ -0.3
PTPRF-213ENST00000481019 CSGALNACT2Q8N6G5 542 aa13.2□□□□□ -0.3
PTPRF-213ENST00000481019 KREMEN2Q8NCW0 462 aa13.2□□□□□ -0.3
PTPRF-213ENST00000481019 TMEM174Q8WUU8 243 aa13.2□□□□□ -0.3
PTPRF-213ENST00000481019 SMARCE1Q969G3 411 aa13.2□□□□□ -0.3
PTPRF-213ENST00000481019 ELMO3Q96BJ8 720 aa13.2□□□□□ -0.3
PTPRF-213ENST00000481019 EEF2KMTQ96G04 330 aa13.2□□□□□ -0.3
PTPRF-213ENST00000481019 CGRRF1Q99675 332 aa13.2□□□□□ -0.3
PTPRF-213ENST00000481019 NAT10Q9H0A0 1025 aaKnown RBP13.2□□□□□ -0.3
PTPRF-213ENST00000481019 ADAM7Q9H2U9 754 aa13.2□□□□□ -0.3
PTPRF-213ENST00000481019 POMKQ9H5K3 350 aa13.2□□□□□ -0.3
PTPRF-213ENST00000481019 KIAA1586Q9HCI6 787 aa13.2□□□□□ -0.3
PTPRF-213ENST00000481019 DZANK1Q9NVP4 752 aa13.2□□□□□ -0.3
PTPRF-213ENST00000481019 CGNQ9P2M7 1197 aaKnown RBP13.2□□□□□ -0.3
PTPRF-213ENST00000481019 FBXW11Q9UKB1 542 aa13.2□□□□□ -0.3
PTPRF-213ENST00000481019 TRAF3IP3Q9Y228 551 aa13.2□□□□□ -0.3
PTPRF-213ENST00000481019 DOCK6Q96HP0 2047 aa13.19□□□□□ -0.3
PTPRF-213ENST00000481019 WDR27A2RRH5 827 aa13.19□□□□□ -0.3
PTPRF-213ENST00000481019 LRRIQ3A6PVS8 624 aaPredicted RBP13.19□□□□□ -0.3
PTPRF-213ENST00000481019 BIN1O00499 593 aa13.19□□□□□ -0.3
PTPRF-213ENST00000481019 SEC24AO95486 1093 aa13.19□□□□□ -0.3
PTPRF-213ENST00000481019 CST3P01034 146 aaPredicted RBP13.19□□□□□ -0.3
PTPRF-213ENST00000481019 HOXB8P17481 243 aaPredicted RBP13.19□□□□□ -0.3
PTPRF-213ENST00000481019 SP100P23497 879 aaPredicted RBP13.19□□□□□ -0.3
PTPRF-213ENST00000481019 CTXN3Q4LDR2 81 aa13.19□□□□□ -0.3
PTPRF-213ENST00000481019 ZNF658Q5TYW1 1059 aaPredicted RBP13.19□□□□□ -0.3
PTPRF-213ENST00000481019 SLC8B1Q6J4K2 584 aa13.19□□□□□ -0.3
PTPRF-213ENST00000481019 NT5DC4Q86YG4 428 aa13.19□□□□□ -0.3
PTPRF-213ENST00000481019 TRIML1Q8N9V2 468 aa13.19□□□□□ -0.3
PTPRF-213ENST00000481019 GSDMAQ96QA5 445 aa13.19□□□□□ -0.3
PTPRF-213ENST00000481019 TSPY26PQ9H489 355 aa13.19□□□□□ -0.3
PTPRF-213ENST00000481019 ANO10Q9NW15 660 aa13.19□□□□□ -0.3
PTPRF-213ENST00000481019 RMND1Q9NWS8 449 aa13.19□□□□□ -0.3
PTPRF-213ENST00000481019 DACH1Q9UI36 760 aa13.19□□□□□ -0.3
PTPRF-213ENST00000481019 DENND4AQ7Z401 1863 aa13.19□□□□□ -0.3
PTPRF-213ENST00000481019 CCDC195A0A1B0GUA6 201 aa13.18□□□□□ -0.3
PTPRF-213ENST00000481019 TRIM49BA6NDI0 452 aa13.18□□□□□ -0.3
PTPRF-213ENST00000481019 GOLGA6L3A6NEY3 463 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms