RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 PWP2Q15269 919 aaKnown RBP6.53□□□□□ -1.36
UPF3A-205ENST00000479712 KIAA0753Q2KHM9 967 aa6.53□□□□□ -1.36
UPF3A-205ENST00000479712 CCDC157Q569K6 752 aa6.53□□□□□ -1.36
UPF3A-205ENST00000479712 PRR31Q5SQ13 230 aa6.53□□□□□ -1.36
UPF3A-205ENST00000479712 THEMIS2Q5TEJ8 643 aa6.53□□□□□ -1.36
UPF3A-205ENST00000479712 NPNTQ6UXI9 565 aa6.53□□□□□ -1.36
UPF3A-205ENST00000479712 ABHD15Q6UXT9 468 aa6.53□□□□□ -1.36
UPF3A-205ENST00000479712 DLK2Q6UY11 383 aa6.53□□□□□ -1.36
UPF3A-205ENST00000479712 C11orf96Q7Z7L8 435 aa6.53□□□□□ -1.36
UPF3A-205ENST00000479712 DAAM2Q86T65 1068 aa6.53□□□□□ -1.36
UPF3A-205ENST00000479712 KIAA0319LQ8IZA0 1049 aa6.53□□□□□ -1.36
UPF3A-205ENST00000479712 RTKN2Q8IZC4 609 aa6.53□□□□□ -1.36
UPF3A-205ENST00000479712 PIK3C3Q8NEB9 887 aa6.53□□□□□ -1.36
UPF3A-205ENST00000479712 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.53□□□□□ -1.36
UPF3A-205ENST00000479712 SNX33Q8WV41 574 aa6.53□□□□□ -1.36
UPF3A-205ENST00000479712 GFM2Q969S9 779 aaKnown RBP6.53□□□□□ -1.36
UPF3A-205ENST00000479712 UIMC1Q96RL1 719 aa6.53□□□□□ -1.36
UPF3A-205ENST00000479712 LRFN3Q9BTN0 628 aa6.53□□□□□ -1.36
UPF3A-205ENST00000479712 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.53□□□□□ -1.36
UPF3A-205ENST00000479712 VWA7Q9Y334 891 aa6.53□□□□□ -1.36
UPF3A-205ENST00000479712 PCDHB1Q9Y5F3 818 aa6.53□□□□□ -1.36
UPF3A-205ENST00000479712 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.53□□□□□ -1.36
UPF3A-205ENST00000479712 HTTP42858 3142 aa6.53□□□□□ -1.36
UPF3A-205ENST00000479712 MON2Q7Z3U7 1717 aa6.53□□□□□ -1.36
UPF3A-205ENST00000479712 MUC6Q6W4X9 2439 aa6.52□□□□□ -1.36
UPF3A-205ENST00000479712 PIK3C2GO75747 1445 aa6.52□□□□□ -1.37
UPF3A-205ENST00000479712 ARID1BQ8NFD5 2236 aaPredicted RBP6.52□□□□□ -1.37
UPF3A-205ENST00000479712 SLC16A6O15403 523 aa6.52□□□□□ -1.37
UPF3A-205ENST00000479712 KLHL18O94889 574 aa6.52□□□□□ -1.37
UPF3A-205ENST00000479712 LDHAP00338 332 aaKnown RBP6.52□□□□□ -1.37
UPF3A-205ENST00000479712 ZNF28P17035 718 aa6.52□□□□□ -1.37
UPF3A-205ENST00000479712 MAP2K6P52564 334 aa6.52□□□□□ -1.37
UPF3A-205ENST00000479712 DSC2Q02487 901 aa6.52□□□□□ -1.37
UPF3A-205ENST00000479712 UBE3CQ15386 1083 aa6.52□□□□□ -1.37
UPF3A-205ENST00000479712 MST1LQ2TV78 715 aa6.52□□□□□ -1.37
UPF3A-205ENST00000479712 ANO6Q4KMQ2 910 aa6.52□□□□□ -1.37
UPF3A-205ENST00000479712 RGMBQ6NW40 437 aa6.52□□□□□ -1.37
UPF3A-205ENST00000479712 DARS2Q6PI48 645 aaKnown RBP6.52□□□□□ -1.37
UPF3A-205ENST00000479712 C2CD5Q86YS7 1000 aa6.52□□□□□ -1.37
UPF3A-205ENST00000479712 TMEFF1Q8IYR6 380 aa6.52□□□□□ -1.37
UPF3A-205ENST00000479712 NSUN6Q8TEA1 469 aaKnown RBP6.52□□□□□ -1.37
UPF3A-205ENST00000479712 HOXB13Q92826 284 aaPredicted RBP6.52□□□□□ -1.37
UPF3A-205ENST00000479712 SIGLEC10Q96LC7 697 aa6.52□□□□□ -1.37
UPF3A-205ENST00000479712 STRBPQ96SI9 672 aaKnown RBP6.52□□□□□ -1.37
UPF3A-205ENST00000479712 L2HGDHQ9H9P8 463 aa6.52□□□□□ -1.37
UPF3A-205ENST00000479712 TDP1Q9NUW8 608 aa6.52□□□□□ -1.37
UPF3A-205ENST00000479712 SRP68Q9UHB9 627 aaKnown RBP6.52□□□□□ -1.37
UPF3A-205ENST00000479712 TRIM17Q9Y577 477 aa6.52□□□□□ -1.37
UPF3A-205ENST00000479712 NR2E3Q9Y5X4 410 aa6.52□□□□□ -1.37
UPF3A-205ENST00000479712 IRAK3Q9Y616 596 aa6.52□□□□□ -1.37
UPF3A-205ENST00000479712 INSRP06213 1382 aa6.52□□□□□ -1.37
UPF3A-205ENST00000479712 MAP2P11137 1827 aaKnown RBP6.51□□□□□ -1.37
UPF3A-205ENST00000479712 CAPN8A6NHC0 703 aa6.51□□□□□ -1.37
UPF3A-205ENST00000479712 SGTAO43765 313 aa6.51□□□□□ -1.37
UPF3A-205ENST00000479712 RFC4P35249 363 aa6.51□□□□□ -1.37
UPF3A-205ENST00000479712 EPS15P42566 896 aa6.51□□□□□ -1.37
UPF3A-205ENST00000479712 MEOX1P50221 254 aa6.51□□□□□ -1.37
UPF3A-205ENST00000479712 AGFG1P52594 562 aaKnown RBP6.51□□□□□ -1.37
UPF3A-205ENST00000479712 CACNB3P54284 484 aa6.51□□□□□ -1.37
UPF3A-205ENST00000479712 C19orf54Q5BKX5 351 aa6.51□□□□□ -1.37
UPF3A-205ENST00000479712 TRIM68Q6AZZ1 485 aa6.51□□□□□ -1.37
UPF3A-205ENST00000479712 Q6ZVL8 140 aa6.51□□□□□ -1.37
UPF3A-205ENST00000479712 TAS1R1Q7RTX1 841 aa6.51□□□□□ -1.37
UPF3A-205ENST00000479712 MSL3Q8N5Y2 521 aaKnown RBP6.51□□□□□ -1.37
UPF3A-205ENST00000479712 NUDT10Q8NFP7 164 aa6.51□□□□□ -1.37
UPF3A-205ENST00000479712 MAFAQ8NHW3 353 aaPredicted RBP6.51□□□□□ -1.37
UPF3A-205ENST00000479712 KLHDC4Q8TBB5 520 aa6.51□□□□□ -1.37
UPF3A-205ENST00000479712 FNIP1Q8TF40 1166 aa6.51□□□□□ -1.37
UPF3A-205ENST00000479712 ZNF480Q8WV37 535 aa6.51□□□□□ -1.37
UPF3A-205ENST00000479712 KCNN1Q92952 543 aa6.51□□□□□ -1.37
UPF3A-205ENST00000479712 NUDT11Q96G61 164 aa6.51□□□□□ -1.37
UPF3A-205ENST00000479712 CDK5RAP3Q96JB5 506 aa6.51□□□□□ -1.37
UPF3A-205ENST00000479712 ELAC2Q9BQ52 826 aaKnown RBP6.51□□□□□ -1.37
UPF3A-205ENST00000479712 MANSC1Q9H8J5 431 aa6.51□□□□□ -1.37
UPF3A-205ENST00000479712 TLR9Q9NR96 1032 aa6.51□□□□□ -1.37
UPF3A-205ENST00000479712 SPATA6Q9NWH7 488 aaPredicted RBP6.51□□□□□ -1.37
UPF3A-205ENST00000479712 L1RE1Q9UN81 338 aa6.51□□□□□ -1.37
UPF3A-205ENST00000479712 PCDHGB6Q9Y5F9 930 aa6.51□□□□□ -1.37
UPF3A-205ENST00000479712 CACNA1BQ00975 2339 aa6.5□□□□□ -1.37
UPF3A-205ENST00000479712 PRUNE2Q8WUY3 3088 aa6.5□□□□□ -1.37
UPF3A-205ENST00000479712 CACNA1SQ13698 1873 aa6.5□□□□□ -1.37
UPF3A-205ENST00000479712 POLRMTO00411 1230 aaKnown RBP6.5□□□□□ -1.37
UPF3A-205ENST00000479712 GOLIM4O00461 696 aa6.5□□□□□ -1.37
UPF3A-205ENST00000479712 PQBP1O60828 265 aaKnown RBP6.5□□□□□ -1.37
UPF3A-205ENST00000479712 MYL3P08590 195 aa6.5□□□□□ -1.37
UPF3A-205ENST00000479712 RPL13P26373 211 aaKnown RBP6.5□□□□□ -1.37
UPF3A-205ENST00000479712 SLC6A9P48067 706 aa6.5□□□□□ -1.37
UPF3A-205ENST00000479712 PER3P56645 1201 aa6.5□□□□□ -1.37
UPF3A-205ENST00000479712 CDC42EP1Q00587 391 aa6.5□□□□□ -1.37
UPF3A-205ENST00000479712 ADAM15Q13444 863 aa6.5□□□□□ -1.37
UPF3A-205ENST00000479712 SEMA5AQ13591 1074 aa6.5□□□□□ -1.37
UPF3A-205ENST00000479712 CNN3Q15417 329 aaKnown RBP6.5□□□□□ -1.37
UPF3A-205ENST00000479712 RNF220Q5VTB9 566 aa6.5□□□□□ -1.37
UPF3A-205ENST00000479712 SMC5Q8IY18 1101 aa6.5□□□□□ -1.37
UPF3A-205ENST00000479712 PARD3BQ8TEW8 1205 aa6.5□□□□□ -1.37
UPF3A-205ENST00000479712 RAB24Q969Q5 203 aa6.5□□□□□ -1.37
UPF3A-205ENST00000479712 CLPTM1LQ96KA5 538 aa6.5□□□□□ -1.37
UPF3A-205ENST00000479712 UHRF1Q96T88 793 aaPredicted RBP6.5□□□□□ -1.37
UPF3A-205ENST00000479712 BHMT2Q9H2M3 363 aa6.5□□□□□ -1.37
UPF3A-205ENST00000479712 FAM184BQ9ULE4 1060 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms