RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 JAK2O60674 1132 aa7.6□□□□□ -1.19
CCDC88A-213ENST00000476903 STBD1O95210 358 aa7.6□□□□□ -1.19
CCDC88A-213ENST00000476903 MMP1P03956 469 aa7.6□□□□□ -1.19
CCDC88A-213ENST00000476903 P4HBP07237 508 aaKnown RBP7.6□□□□□ -1.19
CCDC88A-213ENST00000476903 ZSCAN20P17040 1043 aaPredicted RBP7.6□□□□□ -1.19
CCDC88A-213ENST00000476903 IBSPP21815 317 aaPredicted RBP7.6□□□□□ -1.19
CCDC88A-213ENST00000476903 EIF4BP23588 611 aaKnown RBP7.6□□□□□ -1.19
CCDC88A-213ENST00000476903 QARSP47897 775 aaKnown RBP7.6□□□□□ -1.19
CCDC88A-213ENST00000476903 GPC3P51654 580 aa7.6□□□□□ -1.19
CCDC88A-213ENST00000476903 OXCT1P55809 520 aa7.6□□□□□ -1.19
CCDC88A-213ENST00000476903 PAN2Q504Q3 1202 aaKnown RBP7.6□□□□□ -1.19
CCDC88A-213ENST00000476903 NAALADL2Q58DX5 795 aa7.6□□□□□ -1.19
CCDC88A-213ENST00000476903 EARS2Q5JPH6 523 aaKnown RBP7.6□□□□□ -1.19
CCDC88A-213ENST00000476903 EXOC8Q8IYI6 725 aa7.6□□□□□ -1.19
CCDC88A-213ENST00000476903 HAS1Q92839 578 aa7.6□□□□□ -1.19
CCDC88A-213ENST00000476903 P2RX5Q93086 422 aa7.6□□□□□ -1.19
CCDC88A-213ENST00000476903 CEP89Q96ST8 783 aa7.6□□□□□ -1.19
CCDC88A-213ENST00000476903 JPH2Q9BR39 696 aaPredicted RBP7.6□□□□□ -1.19
CCDC88A-213ENST00000476903 NSUN3Q9H649 340 aaKnown RBP7.6□□□□□ -1.19
CCDC88A-213ENST00000476903 ELAC1Q9H777 363 aaKnown RBP7.6□□□□□ -1.19
CCDC88A-213ENST00000476903 UBE2ZQ9H832 354 aaPredicted RBP7.6□□□□□ -1.19
CCDC88A-213ENST00000476903 ZFYVE1Q9HBF4 777 aa7.6□□□□□ -1.19
CCDC88A-213ENST00000476903 TMEM161AQ9NX61 479 aa7.6□□□□□ -1.19
CCDC88A-213ENST00000476903 LIMCH1Q9UPQ0 1083 aa7.6□□□□□ -1.19
CCDC88A-213ENST00000476903 MRPL42Q9Y6G3 142 aaKnown RBP7.6□□□□□ -1.19
CCDC88A-213ENST00000476903 SPTBN5Q9NRC6 3674 aaKnown RBP7.6□□□□□ -1.19
CCDC88A-213ENST00000476903 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 IGKV6-21A0A0C4DH24 114 aa7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 TMEM150BA6NC51 233 aa7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 TBKBP1A7MCY6 615 aa7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 BTBD18B2RXH4 712 aa7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 GRM6O15303 877 aa7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 TMPRSS2O15393 492 aa7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 NCK2O43639 380 aa7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 NEMFO60524 1076 aa7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 MAFO75444 373 aaPredicted RBP7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 DARSP14868 501 aaKnown RBP7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 FAM189BP81408 668 aa7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 ST3GAL1Q11201 340 aa7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 DSC3Q14574 896 aa7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 EPHA7Q15375 998 aa7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 SAFBQ15424 915 aaKnown RBP eCLIP7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 CALCRLQ16602 461 aa7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 TCEAL5Q5H9L2 206 aa7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 SPOUT1Q5T280 376 aaKnown RBP7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 PLA2G4FQ68DD2 849 aa7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 NCAPH2Q6IBW4 605 aa7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 ANO5Q75V66 913 aa7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 OTUD6AQ7L8S5 288 aa7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 ZNF410Q86VK4 478 aa7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 CCDC83Q8IWF9 413 aa7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 C4orf19Q8IY42 314 aa7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 DIS3L2Q8IYB7 885 aaKnown RBP7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 WDR89Q96FK6 387 aaPredicted RBP7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 ZNF668Q96K58 619 aaPredicted RBP7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 CEP170P1Q96L14 293 aa7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 ZSCAN31Q96LW9 406 aaPredicted RBP7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 SH2D3AQ9BRG2 576 aa7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 LLPHQ9BRT6 129 aaKnown RBP7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 GCOM2Q9BZD3 368 aaPredicted RBP7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 INO80BQ9C086 356 aaPredicted RBP7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 ATP6V0A4Q9HBG4 840 aa7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 CYP26B1Q9NR63 512 aa7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 SUCLA2Q9P2R7 463 aaPredicted RBP7.59□□□□□ -1.19
CCDC88A-213ENST00000476903 A0A087WZ62 844 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 LRRC10BA6NIK2 292 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 FZD6O60353 706 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 LEFTY1O75610 366 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 ITGB1P05556 798 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 FGFR1P11362 822 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 KCNA5P22460 613 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 SFPQP23246 707 aaKnown RBP eCLIP7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 YWHABP31946 246 aaKnown RBP7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 GATMP50440 423 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 POLGP54098 1239 aaPredicted RBP7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 HMGN5P82970 282 aaKnown RBP7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 EHHADHQ08426 723 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 SPIRE1Q08AE8 756 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 DRP2Q13474 957 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 MTMR3Q13615 1198 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 IFI16Q16666 785 aaKnown RBP7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 LEXMQ3ZCV2 418 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 FAM102BQ5T8I3 360 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 ALKBH2Q6NS38 261 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 LILRA6Q6PI73 481 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 EP400NLQ6ZTU2 488 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 ECHDC2Q86YB7 292 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 RHPN2Q8IUC4 686 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 GALNT12Q8IXK2 581 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 NEK9Q8TD19 979 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 PSPC1Q8WXF1 523 aaKnown RBP7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 PPP2R3CQ969Q6 453 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 PABPC5Q96DU9 382 aaKnown RBP7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 DYDC2Q96IM9 177 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 C8orf76Q96K31 380 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 NLRP4Q96MN2 994 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 CORO1BQ9BR76 489 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 FDXACB1Q9BRP7 624 aaPredicted RBP7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 LXNQ9BS40 222 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 ZSWIM4Q9H7M6 989 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms