RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 FBXO40Q9UH90 709 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 LIN7AO14910 233 aaPredicted RBP13.91□□□□□ -0.18
COL6A3-209ENST00000472056 LBRQ14739 615 aaKnown RBP13.91□□□□□ -0.18
COL6A3-209ENST00000472056 KIAA0825Q8IV33 1275 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 ZFYVE19Q96K21 471 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 MED15Q96RN5 788 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 DTNAQ9Y4J8 743 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 SZRD1Q7Z422 152 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 C20orf96Q9NUD7 363 aaPredicted RBP13.91□□□□□ -0.18
COL6A3-209ENST00000472056 TLR2O60603 784 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 BBOX1O75936 387 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 SRGNP10124 158 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 KIAA1841Q6NSI8 718 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 MICALL2Q8IY33 904 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 CNKSR1Q969H4 720 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 WDR24Q96S15 920 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 ETAA1Q9NY74 926 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 ZSWIM5Q9P217 1185 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 APEX2Q9UBZ4 518 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 RPL26L1Q9UNX3 145 aaKnown RBP13.91□□□□□ -0.18
COL6A3-209ENST00000472056 RNF103O00237 685 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 ATP1A1P05023 1023 aaKnown RBP13.91□□□□□ -0.18
COL6A3-209ENST00000472056 CCT8P50990 548 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 AHI1Q8N157 1196 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 DLG3Q92796 817 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 FAM162AQ96A26 154 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 SP110Q9HB58 689 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 CACNA2D2Q9NY47 1150 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 CCDC195A0A1B0GUA6 201 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 DNALI1O14645 258 aaPredicted RBP13.91□□□□□ -0.18
COL6A3-209ENST00000472056 TMA16Q96EY4 203 aaKnown RBP13.91□□□□□ -0.18
COL6A3-209ENST00000472056 AMACRQ9UHK6 382 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 SORCS3Q9UPU3 1222 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 UNC13BO14795 1591 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 MYO3BQ8WXR4 1341 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 POTECB2RU33 542 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 CAPN1P07384 714 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 GRK2P25098 689 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 EIF3EP60228 445 aaKnown RBP13.9□□□□□ -0.18
COL6A3-209ENST00000472056 MEI1Q5TIA1 1274 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 TMEM179Q6ZVK1 233 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 MYCBPAPQ8TBZ2 947 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 MTERF3Q96E29 417 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 EEF2KMTQ96G04 330 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 SMIM31A0A1B0GVY4 71 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 IFNA14P01570 189 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 GYS2P54840 703 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 C1orf228Q6PIY5 440 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 C7orf31Q8N865 590 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 USE1Q9NZ43 259 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 MAPK1P28482 360 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 HPCAP84074 193 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 SETD9Q8NE22 299 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 TNIP3Q96KP6 325 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 NEO1Q92859 1461 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 USP32Q8NFA0 1604 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 MYH14Q7Z406 1995 aaKnown RBP13.9□□□□□ -0.18
COL6A3-209ENST00000472056 KRT74Q7RTS7 529 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 CMTR1Q8N1G2 835 aaKnown RBP13.9□□□□□ -0.18
COL6A3-209ENST00000472056 ZFP42Q96MM3 310 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 PLEKHF1Q96S99 279 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 TIMM44O43615 452 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 PIK3R1P27986 724 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 TTC27Q6P3X3 843 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 LRRC6Q86X45 466 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 MKNK1Q9BUB5 465 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 BARHL2Q9NY43 387 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 JAG2Q9Y219 1238 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 APRTP07741 180 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 PSMC6P62333 389 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 PTK7Q13308 1070 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 SUPT20HL1Q3ZLR7 823 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 HABP4Q5JVS0 413 aaKnown RBP13.9□□□□□ -0.18
COL6A3-209ENST00000472056 NOP9Q86U38 636 aaKnown RBP13.9□□□□□ -0.18
COL6A3-209ENST00000472056 MSL3Q8N5Y2 521 aaKnown RBP13.9□□□□□ -0.18
COL6A3-209ENST00000472056 CAVIN3Q969G5 261 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 SNAP25P60880 206 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 NYAP1Q6ZVC0 841 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 TRPC4APQ8TEL6 797 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 ZNF560Q96MR9 790 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 C7orf25Q9BPX7 421 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 GOLPH3Q9H4A6 298 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 KRT84Q9NSB2 600 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 DKK3Q9UBP4 350 aa13.9□□□□□ -0.18
COL6A3-209ENST00000472056 XPO7Q9UIA9 1087 aaKnown RBP13.9□□□□□ -0.18
COL6A3-209ENST00000472056 B2RBV5 119 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 PDK1Q15118 436 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 MAPRE1Q15691 268 aaKnown RBP13.89□□□□□ -0.19
COL6A3-209ENST00000472056 IYDQ6PHW0 289 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 OTULINQ96BN8 352 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 HINFPQ9BQA5 517 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 GLI2P10070 1586 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 COG2Q14746 738 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 PPIL6Q8IXY8 311 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 ZNF496Q96IT1 587 aaPredicted RBP13.89□□□□□ -0.19
COL6A3-209ENST00000472056 BHMT2Q9H2M3 363 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 FGFR4P22455 802 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 FDFT1P37268 417 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 LRRC1Q9BTT6 524 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 TIMMDC1Q9NPL8 285 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms