RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 NLRP4Q96MN2 994 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 ARID3AQ99856 593 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 SH3GL2Q99962 352 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 MTMR12Q9C0I1 747 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 RAB17Q9H0T7 212 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 GOLPH3Q9H4A6 298 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 PDZD7Q9H5P4 517 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 MINDY3Q9H8M7 445 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 ZNF408Q9H9D4 720 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 EPB41L5Q9HCM4 733 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 ACP6Q9NPH0 428 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 FAM114A2Q9NRY5 505 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 HOMER3Q9NSC5 361 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 CISHQ9NSE2 258 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 PARVAQ9NVD7 372 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 SMARCAL1Q9NZC9 954 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 MTUS1Q9ULD2 1270 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 KIAA1257Q9ULG3 409 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.12□□□□□ -1.11
COL6A3-208ENST00000468792 A0A087WZ62 844 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 TCRBV5S1A1TA0A578 114 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 A6NNZ2 444 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 HAS3O00219 553 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 FSCN2O14926 492 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 MED7O43513 233 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 PSTPIP1O43586 416 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 SPOPO43791 374 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 OPA1O60313 960 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 KPNA6O60684 536 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 PHF2O75151 1096 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 RPLP2P05387 115 aaKnown RBP8.11□□□□□ -1.11
COL6A3-208ENST00000468792 ZNF865P0CJ78 1059 aaPredicted RBP8.11□□□□□ -1.11
COL6A3-208ENST00000468792 STAG3L1P0CL83 205 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 ARF4P18085 180 aaPredicted RBP8.11□□□□□ -1.11
COL6A3-208ENST00000468792 OAS2P29728 719 aaKnown RBP8.11□□□□□ -1.11
COL6A3-208ENST00000468792 HOXC8P31273 242 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 HSPA9P38646 679 aaKnown RBP8.11□□□□□ -1.11
COL6A3-208ENST00000468792 GRM5P41594 1212 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 ASPAP45381 313 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 MYL6P60660 151 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 NKX3-2P78367 333 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 ADAM17P78536 824 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 SLC7A5Q01650 507 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 GUCY2DQ02846 1103 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 MAMLD1Q13495 774 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 MESDQ14696 234 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 ZNF699Q32M78 642 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 TUBB8Q3ZCM7 444 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 SEL1L2Q5TEA6 688 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 EMC10Q5UCC4 262 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 EEF1DP3Q658K8 133 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 LMBRD2Q68DH5 695 aaPredicted RBP8.11□□□□□ -1.11
COL6A3-208ENST00000468792 SPOPLQ6IQ16 392 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 SYDE1Q6ZW31 735 aaPredicted RBP8.11□□□□□ -1.11
COL6A3-208ENST00000468792 ZBTB33Q86T24 672 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 NME8Q8N427 588 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 GOLGA6L1Q8N7Z2 621 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 NIPA2Q8N8Q9 360 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 TMEM35BQ8NCS4 154 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.11□□□□□ -1.11
COL6A3-208ENST00000468792 NPLOC4Q8TAT6 608 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 FNIP1Q8TF40 1166 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 TRAPPC12Q8WVT3 735 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 CASKIN2Q8WXE0 1202 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 SOCS4Q8WXH5 440 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 LRRC45Q96CN5 670 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 CYFIP2Q96F07 1278 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 FDXACB1Q9BRP7 624 aaPredicted RBP8.11□□□□□ -1.11
COL6A3-208ENST00000468792 ADPGKQ9BRR6 497 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 MFRPQ9BY79 579 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 ADAMTS10Q9H324 1103 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 LRRC19Q9H756 370 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 RRAGCQ9HB90 399 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 ADAM22Q9P0K1 906 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 FEZ2Q9UHY8 353 aaPredicted RBP8.11□□□□□ -1.11
COL6A3-208ENST00000468792 SIX4Q9UIU6 781 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 ITGA11Q9UKX5 1188 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 STRIP2Q9ULQ0 834 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 AKT3Q9Y243 479 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 UTP11Q9Y3A2 253 aaKnown RBP8.11□□□□□ -1.11
COL6A3-208ENST00000468792 CEP83Q9Y592 693 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.11□□□□□ -1.11
COL6A3-208ENST00000468792 EVPLQ92817 2033 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 ANK1P16157 1881 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 TRPM7Q96QT4 1865 aa8.11□□□□□ -1.11
COL6A3-208ENST00000468792 MROH7Q68CQ1 1323 aa8.1□□□□□ -1.11
COL6A3-208ENST00000468792 C11orf97A0A1B0GVM6 126 aaPredicted RBP8.1□□□□□ -1.11
COL6A3-208ENST00000468792 GOLGA6BA6NDN3 693 aa8.1□□□□□ -1.11
COL6A3-208ENST00000468792 TMEM191CA6NGB0 347 aa8.1□□□□□ -1.11
COL6A3-208ENST00000468792 LACTBL1A8MY62 500 aa8.1□□□□□ -1.11
COL6A3-208ENST00000468792 GOLGA8KD6RF30 607 aa8.1□□□□□ -1.11
COL6A3-208ENST00000468792 AGPSO00116 658 aa8.1□□□□□ -1.11
COL6A3-208ENST00000468792 B4GALT5O43286 388 aa8.1□□□□□ -1.11
COL6A3-208ENST00000468792 THAP12O43422 761 aa8.1□□□□□ -1.11
COL6A3-208ENST00000468792 TSPAN1O60635 241 aa8.1□□□□□ -1.11
COL6A3-208ENST00000468792 ZMYND10O75800 440 aa8.1□□□□□ -1.11
COL6A3-208ENST00000468792 SYF2O95926 243 aaKnown RBP8.1□□□□□ -1.11
COL6A3-208ENST00000468792 WEE2P0C1S8 567 aa8.1□□□□□ -1.11
COL6A3-208ENST00000468792 RRM1P23921 792 aa8.1□□□□□ -1.11
COL6A3-208ENST00000468792 ECHS1P30084 290 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms