RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 IER2Q9BTL4 223 aa13.01□□□□□ -0.33
SQSTM1-206ENST00000466342 TRIM9Q9C026 710 aa13.01□□□□□ -0.33
SQSTM1-206ENST00000466342 CHRDQ9H2X0 955 aa13.01□□□□□ -0.33
SQSTM1-206ENST00000466342 ZHX3Q9H4I2 956 aa13.01□□□□□ -0.33
SQSTM1-206ENST00000466342 ARHGAP28Q9P2N2 729 aa13.01□□□□□ -0.33
SQSTM1-206ENST00000466342 SERTAD1Q9UHV2 236 aa13.01□□□□□ -0.33
SQSTM1-206ENST00000466342 HES2Q9Y543 173 aa13.01□□□□□ -0.33
SQSTM1-206ENST00000466342 ZMYM2Q9UBW7 1377 aa13.01□□□□□ -0.33
SQSTM1-206ENST00000466342 SPAG17Q6Q759 2223 aa13□□□□□ -0.33
SQSTM1-206ENST00000466342 FRMD3A2A2Y4 597 aa13□□□□□ -0.33
SQSTM1-206ENST00000466342 H0YCG3 227 aa13□□□□□ -0.33
SQSTM1-206ENST00000466342 ACKR2O00590 384 aa13□□□□□ -0.33
SQSTM1-206ENST00000466342 SLC16A4O15374 487 aa13□□□□□ -0.33
SQSTM1-206ENST00000466342 B4GALT5O43286 388 aa13□□□□□ -0.33
SQSTM1-206ENST00000466342 HRO43593 1189 aa13□□□□□ -0.33
SQSTM1-206ENST00000466342 NR1I2O75469 434 aa13□□□□□ -0.33
SQSTM1-206ENST00000466342 PRKCBP05771 671 aa13□□□□□ -0.33
SQSTM1-206ENST00000466342 CNR2P34972 360 aa13□□□□□ -0.33
SQSTM1-206ENST00000466342 MLH1P40692 756 aa13□□□□□ -0.33
SQSTM1-206ENST00000466342 SMTNP53814 917 aa13□□□□□ -0.33
SQSTM1-206ENST00000466342 NCKAP1LP55160 1127 aa13□□□□□ -0.33
SQSTM1-206ENST00000466342 DSC1Q08554 894 aa13□□□□□ -0.33
SQSTM1-206ENST00000466342 MAPK6Q16659 721 aa13□□□□□ -0.33
SQSTM1-206ENST00000466342 CNNM4Q6P4Q7 775 aa13□□□□□ -0.33
SQSTM1-206ENST00000466342 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13□□□□□ -0.33
SQSTM1-206ENST00000466342 COLGALT2Q8IYK4 626 aa13□□□□□ -0.33
SQSTM1-206ENST00000466342 MYCT1Q8N699 235 aa13□□□□□ -0.33
SQSTM1-206ENST00000466342 KXD1Q9BQD3 176 aa13□□□□□ -0.33
SQSTM1-206ENST00000466342 TMEM134Q9H6X4 195 aa13□□□□□ -0.33
SQSTM1-206ENST00000466342 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13□□□□□ -0.33
SQSTM1-206ENST00000466342 CHST7Q9NS84 486 aa13□□□□□ -0.33
SQSTM1-206ENST00000466342 MARCH5Q9NX47 278 aa13□□□□□ -0.33
SQSTM1-206ENST00000466342 MIOSQ9NXC5 875 aa13□□□□□ -0.33
SQSTM1-206ENST00000466342 FNIP2Q9P278 1114 aa13□□□□□ -0.33
SQSTM1-206ENST00000466342 SEL1LQ9UBV2 794 aa13□□□□□ -0.33
SQSTM1-206ENST00000466342 SHISA7A6NL88 538 aa12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 K7ERI5 159 aa12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 N4BP3O15049 544 aa12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 TRAK2O60296 914 aa12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 ZNF202O95125 648 aa12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 KCNK5O95279 499 aa12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 NPTXRO95502 500 aa12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 IDEP14735 1019 aa12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 GAP43P17677 238 aa12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 SCP2P22307 547 aa12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 AFMP43652 599 aa12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 OR1G1P47890 313 aa12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 CCR3P51677 355 aa12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 PRPF4BQ13523 1007 aaKnown RBP12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 AASDHQ4L235 1098 aaPredicted RBP12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 CDR2LQ86X02 465 aaPredicted RBP12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 SFR1Q86XK3 245 aa12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 CCDC65Q8IXS2 484 aa12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 GPR65Q8IYL9 337 aa12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 FMR1NBQ8N0W7 255 aaPredicted RBP12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 ZNF687Q8N1G0 1237 aa12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 TMEM161BQ8NDZ6 487 aa12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 GSTCDQ8NEC7 633 aa12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 KCNN1Q92952 543 aa12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 ZFP42Q96MM3 310 aa12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 FIZ1Q96SL8 496 aa12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 C7orf25Q9BPX7 421 aa12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 ADPGKQ9BRR6 497 aa12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 APOL6Q9BWW8 343 aa12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 NXF3Q9H4D5 531 aaKnown RBP12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 HEBP1Q9NRV9 189 aa12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 PRG3Q9Y2Y8 225 aaPredicted RBP12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 LAMA1P25391 3075 aa12.99□□□□□ -0.33
SQSTM1-206ENST00000466342 CITO14578 2027 aa12.98□□□□□ -0.33
SQSTM1-206ENST00000466342 WDFY3Q8IZQ1 3526 aa12.98□□□□□ -0.33
SQSTM1-206ENST00000466342 PDCD11Q14690 1871 aaKnown RBP12.98□□□□□ -0.33
SQSTM1-206ENST00000466342 TMEM8BA6NDV4 472 aa12.98□□□□□ -0.33
SQSTM1-206ENST00000466342 K7ENM7 598 aa12.98□□□□□ -0.33
SQSTM1-206ENST00000466342 EDN1P05305 212 aa12.98□□□□□ -0.33
SQSTM1-206ENST00000466342 HNRNPA1P09651 372 aaKnown RBP eCLIP12.98□□□□□ -0.33
SQSTM1-206ENST00000466342 MAPTP10636 758 aaKnown RBP12.98□□□□□ -0.33
SQSTM1-206ENST00000466342 LIG1P18858 919 aa12.98□□□□□ -0.33
SQSTM1-206ENST00000466342 AKAP5P24588 427 aa12.98□□□□□ -0.33
SQSTM1-206ENST00000466342 SCNN1GP51170 649 aa12.98□□□□□ -0.33
SQSTM1-206ENST00000466342 ASIC1P78348 528 aa12.98□□□□□ -0.33
SQSTM1-206ENST00000466342 NTHL1P78549 312 aa12.98□□□□□ -0.33
SQSTM1-206ENST00000466342 FAM160A1Q05DH4 1040 aa12.98□□□□□ -0.33
SQSTM1-206ENST00000466342 GRIK3Q13003 919 aa12.98□□□□□ -0.33
SQSTM1-206ENST00000466342 KRBA2Q6ZNG9 492 aa12.98□□□□□ -0.33
SQSTM1-206ENST00000466342 TAS1R3Q7RTX0 852 aa12.98□□□□□ -0.33
SQSTM1-206ENST00000466342 HAUS6Q7Z4H7 955 aa12.98□□□□□ -0.33
SQSTM1-206ENST00000466342 GLYCTKQ8IVS8 523 aa12.98□□□□□ -0.33
SQSTM1-206ENST00000466342 ENGASEQ8NFI3 743 aa12.98□□□□□ -0.33
SQSTM1-206ENST00000466342 PAGE5Q96GU1 130 aa12.98□□□□□ -0.33
SQSTM1-206ENST00000466342 COLEC11Q9BWP8 271 aa12.98□□□□□ -0.33
SQSTM1-206ENST00000466342 LSM14BQ9BX40 385 aaKnown RBP12.98□□□□□ -0.33
SQSTM1-206ENST00000466342 ST6GALNAC4Q9H4F1 302 aa12.98□□□□□ -0.33
SQSTM1-206ENST00000466342 OLFML3Q9NRN5 406 aa12.98□□□□□ -0.33
SQSTM1-206ENST00000466342 PANK4Q9NVE7 773 aa12.98□□□□□ -0.33
SQSTM1-206ENST00000466342 PARP2Q9UGN5 583 aa12.98□□□□□ -0.33
SQSTM1-206ENST00000466342 NDRG2Q9UN36 371 aaKnown RBP12.98□□□□□ -0.33
SQSTM1-206ENST00000466342 TRIP11Q15643 1979 aa12.98□□□□□ -0.33
SQSTM1-206ENST00000466342 F5P12259 2224 aa12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 SDK1Q7Z5N4 2213 aa12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 SRRM3A6NNA2 597 aaPredicted RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms