RNA–Protein interactions for RNA: ENST00000465132.1

CPSF4-209, Transcript of cleavage and polyadenylation specific factor 4, human

TSL 2

Gene CPSF4, Length 927 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF4-209	ENST00000465132	RPF1	Q9H9Y2	349 aa	Known RBP	18.9	■□□□□ 0.62
CPSF4-209	ENST00000465132	CHST7	Q9NS84	486 aa		18.9	■□□□□ 0.62
CPSF4-209	ENST00000465132	PARP2	Q9UGN5	583 aa		18.9	■□□□□ 0.62
CPSF4-209	ENST00000465132	DUSP12	Q9UNI6	340 aa		18.9	■□□□□ 0.62
CPSF4-209	ENST00000465132	ANKRD63	C9JTQ0	380 aa		18.89	■□□□□ 0.61
CPSF4-209	ENST00000465132	TGFB1I1	O43294	461 aa		18.89	■□□□□ 0.61
CPSF4-209	ENST00000465132	N4BP1	O75113	896 aa	Known RBP	18.89	■□□□□ 0.61
CPSF4-209	ENST00000465132	IL18RAP	O95256	599 aa		18.89	■□□□□ 0.61
CPSF4-209	ENST00000465132	GNA14	O95837	355 aa		18.89	■□□□□ 0.61
CPSF4-209	ENST00000465132	NR3C1	P04150	777 aa		18.89	■□□□□ 0.61
CPSF4-209	ENST00000465132	HARS	P12081	509 aa	Known RBP	18.89	■□□□□ 0.61
CPSF4-209	ENST00000465132	AKAP5	P24588	427 aa		18.89	■□□□□ 0.61
CPSF4-209	ENST00000465132	HOXD13	P35453	343 aa		18.89	■□□□□ 0.61
CPSF4-209	ENST00000465132	ADAM9	Q13443	819 aa		18.89	■□□□□ 0.61
CPSF4-209	ENST00000465132	EEF1DP3	Q658K8	133 aa		18.89	■□□□□ 0.61
CPSF4-209	ENST00000465132	CWF19L1	Q69YN2	538 aa	Known RBP	18.89	■□□□□ 0.61
CPSF4-209	ENST00000465132	FLCN	Q8NFG4	579 aa		18.89	■□□□□ 0.61
CPSF4-209	ENST00000465132	NOC3L	Q8WTT2	800 aa	Known RBP	18.89	■□□□□ 0.61
CPSF4-209	ENST00000465132	CEP63	Q96MT8	703 aa		18.89	■□□□□ 0.61
CPSF4-209	ENST00000465132	WDR6	Q9NNW5	1121 aa	Known RBP	18.89	■□□□□ 0.61
CPSF4-209	ENST00000465132	HSPBP1	Q9NZL4	362 aa		18.89	■□□□□ 0.61
CPSF4-209	ENST00000465132	IGSF9	Q9P2J2	1179 aa		18.89	■□□□□ 0.61
CPSF4-209	ENST00000465132	USP34	Q70CQ2	3546 aa		18.88	■□□□□ 0.61
CPSF4-209	ENST00000465132	CIT	O14578	2027 aa		18.88	■□□□□ 0.61
CPSF4-209	ENST00000465132	SYCE3	A1L190	88 aa		18.88	■□□□□ 0.61
CPSF4-209	ENST00000465132	TTLL13P	A6NNM8	815 aa		18.88	■□□□□ 0.61
CPSF4-209	ENST00000465132	MAPK13	O15264	365 aa		18.88	■□□□□ 0.61
CPSF4-209	ENST00000465132	XPOT	O43592	962 aa	Known RBP	18.88	■□□□□ 0.61
CPSF4-209	ENST00000465132	RFPL2	O75678	378 aa		18.88	■□□□□ 0.61
CPSF4-209	ENST00000465132	C1R	P00736	705 aa		18.88	■□□□□ 0.61
CPSF4-209	ENST00000465132	PRKCSH	P14314	528 aa	Predicted RBP	18.88	■□□□□ 0.61
CPSF4-209	ENST00000465132	NPR3	P17342	541 aa		18.88	■□□□□ 0.61
CPSF4-209	ENST00000465132	BMP6	P22004	513 aa		18.88	■□□□□ 0.61
CPSF4-209	ENST00000465132	NR2F2	P24468	414 aa		18.88	■□□□□ 0.61
CPSF4-209	ENST00000465132	NBL1	P41271	181 aa		18.88	■□□□□ 0.61
CPSF4-209	ENST00000465132	PPP2R3A	Q06190	1150 aa		18.88	■□□□□ 0.61
CPSF4-209	ENST00000465132	DPCR1	Q3MIW9	517 aa		18.88	■□□□□ 0.61
CPSF4-209	ENST00000465132	FUT10	Q6P4F1	479 aa		18.88	■□□□□ 0.61
CPSF4-209	ENST00000465132	SLC39A4	Q6P5W5	647 aa		18.88	■□□□□ 0.61
CPSF4-209	ENST00000465132	CDR2L	Q86X02	465 aa	Predicted RBP	18.88	■□□□□ 0.61
CPSF4-209	ENST00000465132	FAM114A1	Q8IWE2	563 aa		18.88	■□□□□ 0.61
CPSF4-209	ENST00000465132	HDAC7	Q8WUI4	952 aa		18.88	■□□□□ 0.61
CPSF4-209	ENST00000465132	ZBTB45	Q96K62	511 aa	Predicted RBP	18.88	■□□□□ 0.61
CPSF4-209	ENST00000465132	B3GALT6	Q96L58	329 aa		18.88	■□□□□ 0.61
CPSF4-209	ENST00000465132	MKNK1	Q9BUB5	465 aa		18.88	■□□□□ 0.61
CPSF4-209	ENST00000465132	GPR62	Q9BZJ7	368 aa		18.88	■□□□□ 0.61
CPSF4-209	ENST00000465132	ASB7	Q9H672	318 aa		18.88	■□□□□ 0.61
CPSF4-209	ENST00000465132	CTNND2	Q9UQB3	1225 aa		18.88	■□□□□ 0.61
CPSF4-209	ENST00000465132	ABLIM1	O14639	778 aa		18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	SLC16A3	O15427	465 aa	Known RBP	18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	CLUH	O75153	1309 aa		18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	PAPLN	O95428	1278 aa		18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	EDN1	P05305	212 aa		18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	SPATA31D3	P0C874	917 aa		18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	EPB41	P11171	864 aa	Known RBP	18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	AOC1	P19801	751 aa		18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	ADSS	P30520	456 aa		18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	GBP2	P32456	591 aa	Predicted RBP	18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	PSMC2	P35998	433 aa	Known RBP	18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	CYP2J2	P51589	502 aa		18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	ENPEP	Q07075	957 aa		18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	GRIK3	Q13003	919 aa		18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	C2orf16	Q68DN1	1984 aa		18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	SPATA31D4	Q6ZUB0	917 aa		18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	PALB2	Q86YC2	1186 aa		18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	NT5DC4	Q86YG4	428 aa		18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	GPR65	Q8IYL9	337 aa		18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	CSGALNACT2	Q8N6G5	542 aa		18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	SMG7	Q92540	1137 aa	Known RBP	18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	ZNF707	Q96C28	371 aa	Predicted RBP	18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	FAM213A	Q9BRX8	229 aa		18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	PCIF1	Q9H4Z3	704 aa		18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	METTL14	Q9HCE5	456 aa	Known RBP	18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	SLC38A7	Q9NVC3	462 aa		18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	EPS15L1	Q9UBC2	864 aa		18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	ADAM28	Q9UKQ2	775 aa		18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	FBXL21	Q9UKT6	434 aa		18.87	■□□□□ 0.61
CPSF4-209	ENST00000465132	PLXNA3	P51805	1871 aa		18.86	■□□□□ 0.61
CPSF4-209	ENST00000465132	SMTNL1	A8MU46	457 aa		18.86	■□□□□ 0.61
CPSF4-209	ENST00000465132	CLIC2	O15247	247 aa		18.86	■□□□□ 0.61
CPSF4-209	ENST00000465132	TGM5	O43548	720 aa		18.86	■□□□□ 0.61
CPSF4-209	ENST00000465132	PI15	O43692	258 aa		18.86	■□□□□ 0.61
CPSF4-209	ENST00000465132	STX10	O60499	249 aa		18.86	■□□□□ 0.61
CPSF4-209	ENST00000465132	KRT13	P13646	458 aa		18.86	■□□□□ 0.61
CPSF4-209	ENST00000465132	TPM4	P67936	248 aa		18.86	■□□□□ 0.61
CPSF4-209	ENST00000465132	SNRNP35	Q16560	246 aa	Known RBP	18.86	■□□□□ 0.61
CPSF4-209	ENST00000465132	USP41	Q3LFD5	358 aa		18.86	■□□□□ 0.61
CPSF4-209	ENST00000465132	ZCWPW2	Q504Y3	356 aa		18.86	■□□□□ 0.61
CPSF4-209	ENST00000465132	ANKRD40	Q6AI12	368 aa		18.86	■□□□□ 0.61
CPSF4-209	ENST00000465132	INTS8	Q75QN2	995 aa	Known RBP	18.86	■□□□□ 0.61
CPSF4-209	ENST00000465132	ASCL5	Q7RTU5	278 aa		18.86	■□□□□ 0.61
CPSF4-209	ENST00000465132	SIX5	Q8N196	739 aa		18.86	■□□□□ 0.61
CPSF4-209	ENST00000465132	RABGGTA	Q92696	567 aa		18.86	■□□□□ 0.61
CPSF4-209	ENST00000465132	BPIFA3	Q9BQP9	254 aa		18.86	■□□□□ 0.61
CPSF4-209	ENST00000465132	CBWD1	Q9BRT8	395 aa		18.86	■□□□□ 0.61
CPSF4-209	ENST00000465132	PLEKHA4	Q9H4M7	779 aa		18.86	■□□□□ 0.61
CPSF4-209	ENST00000465132	DMAC2	Q9NW81	257 aa		18.86	■□□□□ 0.61
CPSF4-209	ENST00000465132	SNTG2	Q9NY99	539 aa		18.86	■□□□□ 0.61

Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms