RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 SPDYCQ5MJ68 293 aa19.94■□□□□ 0.78
CCDC88B-204ENST00000463837 FRA10AC1Q70Z53 315 aa19.94■□□□□ 0.78
CCDC88B-204ENST00000463837 PRUNE1Q86TP1 453 aa19.94■□□□□ 0.78
CCDC88B-204ENST00000463837 LDHDQ86WU2 507 aa19.94■□□□□ 0.78
CCDC88B-204ENST00000463837 THAP11Q96EK4 314 aa19.94■□□□□ 0.78
CCDC88B-204ENST00000463837 MRPL1Q9BYD6 325 aaKnown RBP19.94■□□□□ 0.78
CCDC88B-204ENST00000463837 KRT4P19013 534 aa19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 NFKBIAP25963 317 aa19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 ST3GAL1Q11201 340 aa19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 MOXD1Q6UVY6 613 aa19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 RIT2Q99578 217 aa19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 NSMCE4AQ9NXX6 385 aa19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 CDY2AQ9Y6F7 541 aa19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 CDY1Q9Y6F8 540 aa19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 KCNJ1P48048 391 aa19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 TRIP10Q15642 601 aa19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 NTRK3Q16288 839 aa19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 WRNIP1Q96S55 665 aa19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 SRRM3A6NNA2 597 aaPredicted RBP19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 MUTP22033 750 aa19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 FASTKD1Q53R41 847 aaKnown RBP19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 ACAD10Q6JQN1 1059 aa19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 DCLRE1BQ9H816 532 aa19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 RAB6BQ9NRW1 208 aa19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 TBC1D23Q9NUY8 699 aa19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 KCNA4P22459 653 aa19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 HOXD10P28358 340 aa19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 COPB2P35606 906 aa19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 ARPP19P56211 112 aa19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 NSUN2Q08J23 767 aaKnown RBP eCLIP19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 SGSM1Q2NKQ1 1148 aa19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 LMBRD2Q68DH5 695 aaPredicted RBP19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 SNRNP48Q6IEG0 339 aaKnown RBP19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 FBXO33Q7Z6M2 555 aa19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 ATXN7L3BQ96GX2 97 aa19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 THAP2Q9H0W7 228 aa19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 ARHGAP20Q9P2F6 1191 aa19.93■□□□□ 0.78
CCDC88B-204ENST00000463837 C16orf96A6NNT2 1141 aa19.92■□□□□ 0.78
CCDC88B-204ENST00000463837 SUPT3HO75486 399 aa19.92■□□□□ 0.78
CCDC88B-204ENST00000463837 SEC24DO94855 1032 aaPredicted RBP19.92■□□□□ 0.78
CCDC88B-204ENST00000463837 DSG1Q02413 1049 aa19.92■□□□□ 0.78
CCDC88B-204ENST00000463837 TDRD3Q9H7E2 651 aaKnown RBP19.92■□□□□ 0.78
CCDC88B-204ENST00000463837 UBTFL6P0CB48 400 aaPredicted RBP19.92■□□□□ 0.78
CCDC88B-204ENST00000463837 CCDC92Q53HC0 331 aaPredicted RBP19.92■□□□□ 0.78
CCDC88B-204ENST00000463837 FAM217BQ9NTX9 383 aaPredicted RBP19.92■□□□□ 0.78
CCDC88B-204ENST00000463837 KRT16P08779 473 aa19.92■□□□□ 0.78
CCDC88B-204ENST00000463837 SP8Q8IXZ3 490 aa19.92■□□□□ 0.78
CCDC88B-204ENST00000463837 PPP1R36Q96LQ0 422 aa19.92■□□□□ 0.78
CCDC88B-204ENST00000463837 FAM118BQ9BPY3 351 aa19.92■□□□□ 0.78
CCDC88B-204ENST00000463837 ABCF3Q9NUQ8 709 aa19.92■□□□□ 0.78
CCDC88B-204ENST00000463837 ATP6V1G2O95670 118 aa19.92■□□□□ 0.78
CCDC88B-204ENST00000463837 CTCFP49711 727 aaPredicted RBP19.92■□□□□ 0.78
CCDC88B-204ENST00000463837 DNAJC3Q13217 504 aa19.92■□□□□ 0.78
CCDC88B-204ENST00000463837 TEX2Q8IWB9 1127 aa19.92■□□□□ 0.78
CCDC88B-204ENST00000463837 EPS8L3Q8TE67 593 aaKnown RBP19.92■□□□□ 0.78
CCDC88B-204ENST00000463837 MCEEQ96PE7 176 aa19.92■□□□□ 0.78
CCDC88B-204ENST00000463837 CAND2O75155 1236 aa19.91■□□□□ 0.78
CCDC88B-204ENST00000463837 NFX1Q12986 1120 aaKnown RBP19.91■□□□□ 0.78
CCDC88B-204ENST00000463837 PRPF39Q86UA1 669 aaKnown RBP19.91■□□□□ 0.78
CCDC88B-204ENST00000463837 FEZF2Q8TBJ5 459 aa19.91■□□□□ 0.78
CCDC88B-204ENST00000463837 KLF6Q99612 283 aaPredicted RBP19.91■□□□□ 0.78
CCDC88B-204ENST00000463837 VPS33BQ9H267 617 aa19.91■□□□□ 0.78
CCDC88B-204ENST00000463837 SEMA6BQ9H3T3 888 aa19.91■□□□□ 0.78
CCDC88B-204ENST00000463837 JMJD4Q9H9V9 463 aa19.91■□□□□ 0.78
CCDC88B-204ENST00000463837 RXFP1Q9HBX9 757 aa19.91■□□□□ 0.78
CCDC88B-204ENST00000463837 GZMAP12544 262 aa19.91■□□□□ 0.78
CCDC88B-204ENST00000463837 XKR3Q5GH77 459 aa19.91■□□□□ 0.78
CCDC88B-204ENST00000463837 PID1Q7Z2X4 250 aa19.91■□□□□ 0.78
CCDC88B-204ENST00000463837 TEKT4Q8WW24 435 aa19.91■□□□□ 0.78
CCDC88B-204ENST00000463837 EME1Q96AY2 570 aa19.91■□□□□ 0.78
CCDC88B-204ENST00000463837 IFT43Q96FT9 208 aa19.91■□□□□ 0.78
CCDC88B-204ENST00000463837 KAZALD1Q96I82 304 aa19.91■□□□□ 0.78
CCDC88B-204ENST00000463837 APRTP07741 180 aa19.91■□□□□ 0.78
CCDC88B-204ENST00000463837 ADRM1Q16186 407 aa19.91■□□□□ 0.78
CCDC88B-204ENST00000463837 NLRP9Q7RTR0 991 aa19.91■□□□□ 0.78
CCDC88B-204ENST00000463837 LRRN4CLQ8ND94 238 aa19.91■□□□□ 0.78
CCDC88B-204ENST00000463837 ARHGEF1Q92888 912 aaKnown RBP19.91■□□□□ 0.78
CCDC88B-204ENST00000463837 FAM49AQ9H0Q0 323 aaPredicted RBP19.91■□□□□ 0.78
CCDC88B-204ENST00000463837 DDX20Q9UHI6 824 aaKnown RBP19.91■□□□□ 0.78
CCDC88B-204ENST00000463837 CHMP2BQ9UQN3 213 aa19.91■□□□□ 0.78
CCDC88B-204ENST00000463837 DAGLAQ9Y4D2 1042 aa19.91■□□□□ 0.78
CCDC88B-204ENST00000463837 GTPBP10A4D1E9 387 aaKnown RBP19.91■□□□□ 0.78
CCDC88B-204ENST00000463837 FSBPO95073 299 aa19.91■□□□□ 0.78
CCDC88B-204ENST00000463837 ESRRBO95718 433 aa19.91■□□□□ 0.78
CCDC88B-204ENST00000463837 GLI1P08151 1106 aa19.91■□□□□ 0.78
CCDC88B-204ENST00000463837 PCMTD2Q9NV79 361 aa19.91■□□□□ 0.78
CCDC88B-204ENST00000463837 SALL1Q9NSC2 1324 aa19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 CYP11B2P19099 503 aa19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 TARSP26639 723 aaKnown RBP19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 NCOA4Q13772 614 aa19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 ASPSCR1Q9BZE9 553 aa19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 F8VZ95 297 aa19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 DEAF1O75398 565 aaPredicted RBP19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 TNFRSF8P28908 595 aa19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 SPRP35270 261 aaPredicted RBP19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 ANGPTL8Q6UXH0 198 aa19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 GDF3Q9NR23 364 aa19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 IQCA1LA6NCM1 817 aa19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 RPS6KA5O75582 802 aa19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 MYL3P08590 195 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms