RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 C11orf70Q9BRQ4 267 aa13.19□□□□□ -0.3
HDAC4-208ENST00000463007 TCEAL9Q9UHQ7 104 aa13.19□□□□□ -0.3
HDAC4-208ENST00000463007 ZNF112Q9UJU3 913 aa13.19□□□□□ -0.3
HDAC4-208ENST00000463007 ZNF148Q9UQR1 794 aa13.19□□□□□ -0.3
HDAC4-208ENST00000463007 A0A0G2JND7 137 aa13.18□□□□□ -0.3
HDAC4-208ENST00000463007 C2orf71A6NGG8 1288 aa13.18□□□□□ -0.3
HDAC4-208ENST00000463007 ADRB2P07550 413 aa13.18□□□□□ -0.3
HDAC4-208ENST00000463007 CYP11B1P15538 503 aa13.18□□□□□ -0.3
HDAC4-208ENST00000463007 DRG2P55039 364 aaKnown RBP13.18□□□□□ -0.3
HDAC4-208ENST00000463007 NCKAP1LP55160 1127 aa13.18□□□□□ -0.3
HDAC4-208ENST00000463007 TGFB2P61812 414 aa13.18□□□□□ -0.3
HDAC4-208ENST00000463007 PKN2Q16513 984 aaKnown RBP13.18□□□□□ -0.3
HDAC4-208ENST00000463007 UTP4Q969X6 686 aaKnown RBP13.18□□□□□ -0.3
HDAC4-208ENST00000463007 WNK4Q96J92 1243 aa13.18□□□□□ -0.3
HDAC4-208ENST00000463007 UBN1Q9NPG3 1134 aa13.18□□□□□ -0.3
HDAC4-208ENST00000463007 PHTF1Q9UMS5 762 aa13.18□□□□□ -0.3
HDAC4-208ENST00000463007 ADAMTS5Q9UNA0 930 aa13.18□□□□□ -0.3
HDAC4-208ENST00000463007 MAPK13O15264 365 aa13.18□□□□□ -0.3
HDAC4-208ENST00000463007 TP73O15350 636 aa13.18□□□□□ -0.3
HDAC4-208ENST00000463007 STBD1O95210 358 aa13.18□□□□□ -0.3
HDAC4-208ENST00000463007 TAC1P20366 129 aa13.18□□□□□ -0.3
HDAC4-208ENST00000463007 RPS6P62753 249 aaKnown RBP13.18□□□□□ -0.3
HDAC4-208ENST00000463007 ALCAMQ13740 583 aa13.18□□□□□ -0.3
HDAC4-208ENST00000463007 SIX1Q15475 284 aaPredicted RBP13.18□□□□□ -0.3
HDAC4-208ENST00000463007 MIER3Q7Z3K6 550 aa13.18□□□□□ -0.3
HDAC4-208ENST00000463007 C4orf19Q8IY42 314 aa13.18□□□□□ -0.3
HDAC4-208ENST00000463007 ANKLE1Q8NAG6 615 aa13.18□□□□□ -0.3
HDAC4-208ENST00000463007 MAGEC3Q8TD91 643 aa13.18□□□□□ -0.3
HDAC4-208ENST00000463007 NAF1Q96HR8 494 aaKnown RBP13.18□□□□□ -0.3
HDAC4-208ENST00000463007 TAAR1Q96RJ0 339 aa13.18□□□□□ -0.3
HDAC4-208ENST00000463007 SLC5A4Q9NY91 659 aa13.18□□□□□ -0.3
HDAC4-208ENST00000463007 SAE1Q9UBE0 346 aaPredicted RBP13.18□□□□□ -0.3
HDAC4-208ENST00000463007 LRRC37A2A6NM11 1700 aa13.18□□□□□ -0.3
HDAC4-208ENST00000463007 PTPRFP10586 1907 aa13.18□□□□□ -0.3
HDAC4-208ENST00000463007 A0A1W2PPM1 405 aa13.18□□□□□ -0.3
HDAC4-208ENST00000463007 SSC5DA1L4H1 1573 aa13.18□□□□□ -0.3
HDAC4-208ENST00000463007 PLS3P13797 630 aa13.18□□□□□ -0.3
HDAC4-208ENST00000463007 RPA3P35244 121 aaPredicted RBP13.18□□□□□ -0.3
HDAC4-208ENST00000463007 IL9RQ01113 521 aa13.18□□□□□ -0.3
HDAC4-208ENST00000463007 SPOPLQ6IQ16 392 aa13.18□□□□□ -0.3
HDAC4-208ENST00000463007 TRMT10CQ7L0Y3 403 aaKnown RBP13.18□□□□□ -0.3
HDAC4-208ENST00000463007 XXYLT1Q8NBI6 393 aa13.18□□□□□ -0.3
HDAC4-208ENST00000463007 SERPINB12Q96P63 405 aa13.18□□□□□ -0.3
HDAC4-208ENST00000463007 FHDC1Q9C0D6 1143 aaPredicted RBP13.18□□□□□ -0.3
HDAC4-208ENST00000463007 RAVER2Q9HCJ3 691 aaKnown RBP13.18□□□□□ -0.3
HDAC4-208ENST00000463007 LARSQ9P2J5 1176 aaKnown RBP13.18□□□□□ -0.3
HDAC4-208ENST00000463007 ATP9AO75110 1047 aa13.17□□□□□ -0.3
HDAC4-208ENST00000463007 CFHP08603 1231 aa13.17□□□□□ -0.3
HDAC4-208ENST00000463007 HARSP12081 509 aaKnown RBP13.17□□□□□ -0.3
HDAC4-208ENST00000463007 GM2AP17900 193 aa13.17□□□□□ -0.3
HDAC4-208ENST00000463007 RPS12P25398 132 aaKnown RBP13.17□□□□□ -0.3
HDAC4-208ENST00000463007 QARSP47897 775 aaKnown RBP13.17□□□□□ -0.3
HDAC4-208ENST00000463007 CPA2P48052 419 aa13.17□□□□□ -0.3
HDAC4-208ENST00000463007 STRN3Q13033 797 aa13.17□□□□□ -0.3
HDAC4-208ENST00000463007 MTMR1Q13613 665 aa13.17□□□□□ -0.3
HDAC4-208ENST00000463007 HHATQ5VTY9 493 aa13.17□□□□□ -0.3
HDAC4-208ENST00000463007 CRELD2Q6UXH1 353 aaPredicted RBP13.17□□□□□ -0.3
HDAC4-208ENST00000463007 HAUS6Q7Z4H7 955 aa13.17□□□□□ -0.3
HDAC4-208ENST00000463007 ARMC2Q8NEN0 867 aa13.17□□□□□ -0.3
HDAC4-208ENST00000463007 SENP7Q9BQF6 1050 aa13.17□□□□□ -0.3
HDAC4-208ENST00000463007 CCDC77Q9BR77 488 aa13.17□□□□□ -0.3
HDAC4-208ENST00000463007 PDCD2LQ9BRP1 358 aa13.17□□□□□ -0.3
HDAC4-208ENST00000463007 PXMP2Q9NR77 195 aa13.17□□□□□ -0.3
HDAC4-208ENST00000463007 CFAP69A5D8W1 941 aa13.17□□□□□ -0.3
HDAC4-208ENST00000463007 SMIM24O75264 130 aa13.17□□□□□ -0.3
HDAC4-208ENST00000463007 HSPA6P17066 643 aa13.17□□□□□ -0.3
HDAC4-208ENST00000463007 RFX1P22670 979 aa13.17□□□□□ -0.3
HDAC4-208ENST00000463007 ATP5DP30049 168 aa13.17□□□□□ -0.3
HDAC4-208ENST00000463007 TAF1BQ53T94 588 aaPredicted RBP13.17□□□□□ -0.3
HDAC4-208ENST00000463007 MDH1BQ5I0G3 518 aa13.17□□□□□ -0.3
HDAC4-208ENST00000463007 C11orf63Q6NUN7 778 aa13.17□□□□□ -0.3
HDAC4-208ENST00000463007 ZBED8Q8IZ13 594 aa13.17□□□□□ -0.3
HDAC4-208ENST00000463007 ARHGEF3Q9NR81 526 aa13.17□□□□□ -0.3
HDAC4-208ENST00000463007 TBC1D22BQ9NU19 505 aa13.17□□□□□ -0.3
HDAC4-208ENST00000463007 PIM2Q9P1W9 311 aa13.17□□□□□ -0.3
HDAC4-208ENST00000463007 CHKBQ9Y259 395 aa13.17□□□□□ -0.3
HDAC4-208ENST00000463007 DPPA5A6NC42 116 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 VWA5AO00534 786 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 UNC5CO95185 931 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 MYCLP12524 364 aaPredicted RBP13.16□□□□□ -0.3
HDAC4-208ENST00000463007 TUBP50607 506 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 MXRA7P84157 204 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 TCEAL1Q15170 157 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 MUM1Q2TAK8 710 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 MTDHQ86UE4 582 aaKnown RBP13.16□□□□□ -0.3
HDAC4-208ENST00000463007 LRRC8CQ8TDW0 803 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 BICD1Q96G01 975 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 TIPINQ9BVW5 301 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 PLVAPQ9BX97 442 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 TBC1D10AQ9BXI6 508 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 TRABDQ9H4I3 376 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 LTBP3Q9NS15 1303 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 SPDYE5A6NIY4 337 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 YWHABP31946 246 aaKnown RBP13.16□□□□□ -0.3
HDAC4-208ENST00000463007 MAGEA4P43358 317 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 CTCFP49711 727 aaPredicted RBP13.16□□□□□ -0.3
HDAC4-208ENST00000463007 SARNPP82979 210 aaKnown RBP13.16□□□□□ -0.3
HDAC4-208ENST00000463007 ZBTB16Q05516 673 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 MTMR2Q13614 643 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 ZNF394Q53GI3 561 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms