RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	ELF1	P32519	619 aa		9.44	□□□□□ -0.9
RFX3-209	ENST00000451859	RPL9	P32969	192 aa	Known RBP	9.44	□□□□□ -0.9
RFX3-209	ENST00000451859	DDIT3	P35638	169 aa		9.44	□□□□□ -0.9
RFX3-209	ENST00000451859	STAT6	P42226	847 aa		9.44	□□□□□ -0.9
RFX3-209	ENST00000451859	ZNF131	P52739	623 aa		9.44	□□□□□ -0.9
RFX3-209	ENST00000451859	ROR1	Q01973	937 aa		9.44	□□□□□ -0.9
RFX3-209	ENST00000451859	TDG	Q13569	410 aa		9.44	□□□□□ -0.9
RFX3-209	ENST00000451859	RAB33A	Q14088	237 aa		9.44	□□□□□ -0.9
RFX3-209	ENST00000451859	ENOX2	Q16206	610 aa	Known RBP	9.44	□□□□□ -0.9
RFX3-209	ENST00000451859	ANKS3	Q6ZW76	656 aa		9.44	□□□□□ -0.9
RFX3-209	ENST00000451859	PRSS33	Q8NF86	280 aa		9.44	□□□□□ -0.9
RFX3-209	ENST00000451859	FLCN	Q8NFG4	579 aa		9.44	□□□□□ -0.9
RFX3-209	ENST00000451859	ING5	Q8WYH8	240 aa		9.44	□□□□□ -0.9
RFX3-209	ENST00000451859	RPF1	Q9H9Y2	349 aa	Known RBP	9.44	□□□□□ -0.9
RFX3-209	ENST00000451859	HCFC1R1	Q9NWW0	138 aa		9.44	□□□□□ -0.9
RFX3-209	ENST00000451859	TFIP11	Q9UBB9	837 aa	Known RBP	9.44	□□□□□ -0.9
RFX3-209	ENST00000451859	STK17A	Q9UEE5	414 aa		9.44	□□□□□ -0.9
RFX3-209	ENST00000451859	TIMM13	Q9Y5L4	95 aa	Predicted RBP	9.44	□□□□□ -0.9
RFX3-209	ENST00000451859	SRPRB	Q9Y5M8	271 aa	Known RBP	9.44	□□□□□ -0.9
RFX3-209	ENST00000451859	COL4A3	Q01955	1670 aa		9.44	□□□□□ -0.9
RFX3-209	ENST00000451859	MYH10	P35580	1976 aa		9.44	□□□□□ -0.9
RFX3-209	ENST00000451859	VPS13A	Q96RL7	3174 aa		9.43	□□□□□ -0.9
RFX3-209	ENST00000451859		A0A087X0B3	334 aa		9.43	□□□□□ -0.9
RFX3-209	ENST00000451859	TTC26	A0AVF1	554 aa		9.43	□□□□□ -0.9
RFX3-209	ENST00000451859	WDR27	A2RRH5	827 aa		9.43	□□□□□ -0.9
RFX3-209	ENST00000451859	MYMK	A6NI61	221 aa		9.43	□□□□□ -0.9
RFX3-209	ENST00000451859	OGT	O15294	1046 aa		9.43	□□□□□ -0.9
RFX3-209	ENST00000451859	XYLB	O75191	536 aa		9.43	□□□□□ -0.9
RFX3-209	ENST00000451859	CFH	P08603	1231 aa		9.43	□□□□□ -0.9
RFX3-209	ENST00000451859	NFIC	P08651	508 aa		9.43	□□□□□ -0.9
RFX3-209	ENST00000451859	CPB1	P15086	417 aa		9.43	□□□□□ -0.9
RFX3-209	ENST00000451859	RFX1	P22670	979 aa		9.43	□□□□□ -0.9
RFX3-209	ENST00000451859	ACOT2	P49753	483 aa		9.43	□□□□□ -0.9
RFX3-209	ENST00000451859	GTF2B	Q00403	316 aa		9.43	□□□□□ -0.9
RFX3-209	ENST00000451859	NHLH1	Q02575	133 aa		9.43	□□□□□ -0.9
RFX3-209	ENST00000451859	CTXN3	Q4LDR2	81 aa		9.43	□□□□□ -0.9
RFX3-209	ENST00000451859	ZNF280D	Q6N043	979 aa		9.43	□□□□□ -0.9
RFX3-209	ENST00000451859	SLC39A4	Q6P5W5	647 aa		9.43	□□□□□ -0.9
RFX3-209	ENST00000451859	TREML4	Q6UXN2	200 aa		9.43	□□□□□ -0.9
RFX3-209	ENST00000451859	CYP26C1	Q6V0L0	522 aa		9.43	□□□□□ -0.9
RFX3-209	ENST00000451859	SV2B	Q7L1I2	683 aa		9.43	□□□□□ -0.9
RFX3-209	ENST00000451859	NOC3L	Q8WTT2	800 aa	Known RBP	9.43	□□□□□ -0.9
RFX3-209	ENST00000451859	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	9.43	□□□□□ -0.9
RFX3-209	ENST00000451859	MRPL44	Q9H9J2	332 aa	Known RBP	9.43	□□□□□ -0.9
RFX3-209	ENST00000451859	CYP4F11	Q9HBI6	524 aa		9.43	□□□□□ -0.9
RFX3-209	ENST00000451859	FAM86C1	Q9NVL1	165 aa		9.43	□□□□□ -0.9
RFX3-209	ENST00000451859	CA14	Q9ULX7	337 aa		9.43	□□□□□ -0.9
RFX3-209	ENST00000451859	UBQLN1	Q9UMX0	589 aa	Known RBP	9.43	□□□□□ -0.9
RFX3-209	ENST00000451859	BACE2	Q9Y5Z0	518 aa		9.43	□□□□□ -0.9
RFX3-209	ENST00000451859	NUP210	Q8TEM1	1887 aa	Predicted RBP	9.42	□□□□□ -0.9
RFX3-209	ENST00000451859		H7C4K7	107 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	PPEF2	O14830	753 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	SYN3	O14994	580 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	FAM189A1	O60320	539 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	GCNT3	O95395	438 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	PIGR	P01833	764 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	LRG1	P02750	347 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	HNRNPA1	P09651	372 aa	Known RBP eCLIP	9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	OR4Q2	P0C623	313 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	LAMP2	P13473	410 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	AVPR2	P30518	371 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	CDR1	P51861	262 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	TMEM132D	Q14C87	1099 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	SLC39A14	Q15043	492 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	PABPC1L	Q4VXU2	614 aa	Known RBP	9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	ADAL	Q6DHV7	355 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	JADE1	Q6IE81	842 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	DSTYK	Q6XUX3	929 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	CCDC73	Q6ZRK6	1079 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	ALYREF	Q86V81	257 aa	Known RBP	9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	MAP4K3	Q8IVH8	894 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	SIX5	Q8N196	739 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	TMEM105	Q8N8V8	129 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	ITFG1	Q8TB96	612 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	POMGNT1	Q8WZA1	660 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	FGF13	Q92913	245 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	SUSD3	Q96L08	255 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	FIZ1	Q96SL8	496 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	PHOX2B	Q99453	314 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	KXD1	Q9BQD3	176 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	RHOBTB2	Q9BYZ6	727 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	IGSF9	Q9P2J2	1179 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	EPS15L1	Q9UBC2	864 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	DAXX	Q9UER7	740 aa	Predicted RBP	9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	FBXL5	Q9UKA1	691 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	AGO2	Q9UKV8	859 aa	Known RBP	9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	DUSP12	Q9UNI6	340 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	ARIH1	Q9Y4X5	557 aa	Predicted RBP	9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	GTF3C3	Q9Y5Q9	886 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	NUMBL	Q9Y6R0	609 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	CACNA1H	O95180	2353 aa		9.42	□□□□□ -0.9
RFX3-209	ENST00000451859	PATJ	Q8NI35	1801 aa		9.41	□□□□□ -0.9
RFX3-209	ENST00000451859		A0A0B4J269	797 aa		9.41	□□□□□ -0.9
RFX3-209	ENST00000451859	SPTLC2	O15270	562 aa		9.41	□□□□□ -0.9
RFX3-209	ENST00000451859	XPOT	O43592	962 aa	Known RBP	9.41	□□□□□ -0.9
RFX3-209	ENST00000451859	SEC24A	O95486	1093 aa		9.41	□□□□□ -0.9
RFX3-209	ENST00000451859	C1R	P00736	705 aa		9.41	□□□□□ -0.9
RFX3-209	ENST00000451859	GAP43	P17677	238 aa		9.41	□□□□□ -0.9
RFX3-209	ENST00000451859	HOXA9	P31269	272 aa		9.41	□□□□□ -0.9
RFX3-209	ENST00000451859	YWHAH	Q04917	246 aa	Predicted RBP	9.41	□□□□□ -0.9

Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms