RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 OVOL3O00110 214 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 ZNF185O15231 689 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 PMM2O15305 246 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 FOXN1O15353 648 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 PJA2O43164 708 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 SGTAO43765 313 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 ZBED1O96006 694 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 HLA-DOAP06340 250 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 IL2RBP14784 551 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 ALOX15P16050 662 aaPredicted RBP4.43□□□□□ -1.7
VPS41-207ENST00000439468 PHKA1P46020 1223 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 AGFG1P52594 562 aaKnown RBP4.43□□□□□ -1.7
VPS41-207ENST00000439468 RHBDL3P58872 404 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 PLS1Q14651 629 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 SAFBQ15424 915 aaKnown RBP eCLIP4.43□□□□□ -1.7
VPS41-207ENST00000439468 CSRP2Q16527 193 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 SMN1Q16637 294 aaKnown RBP4.43□□□□□ -1.7
VPS41-207ENST00000439468 ANO6Q4KMQ2 910 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 FLYWCH1Q4VC44 716 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 PDCD4Q53EL6 469 aaKnown RBP4.43□□□□□ -1.7
VPS41-207ENST00000439468 FAM47AQ5JRC9 791 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 RNF220Q5VTB9 566 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 CCSAPQ6IQ19 270 aaPredicted RBP4.43□□□□□ -1.7
VPS41-207ENST00000439468 RHOUQ7L0Q8 258 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 ZNF572Q7Z3I7 529 aaPredicted RBP4.43□□□□□ -1.7
VPS41-207ENST00000439468 DAAM2Q86T65 1068 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 SKAP1Q86WV1 359 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 LCORLQ8N3X6 602 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 CPEB3Q8NE35 698 aaKnown RBP4.43□□□□□ -1.7
VPS41-207ENST00000439468 ZG16BQ96DA0 208 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 MYEOVQ96EZ4 313 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 SLC35A4Q96G79 324 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 SLC39A13Q96H72 371 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 MRI1Q9BV20 369 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 REXO4Q9GZR2 422 aaKnown RBP4.43□□□□□ -1.7
VPS41-207ENST00000439468 TMEM60Q9H2L4 133 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 ZMAT3Q9HA38 289 aaKnown RBP4.43□□□□□ -1.7
VPS41-207ENST00000439468 ATP6V0A4Q9HBG4 840 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 KMT5AQ9NQR1 393 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 TMEM140Q9NV12 185 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 PNPOQ9NVS9 261 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 PCDHA6Q9UN73 950 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 ATP11BQ9Y2G3 1177 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 MAP3K2Q9Y2U5 619 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 CHST2Q9Y4C5 530 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 PNPLA7Q6ZV29 1317 aa4.43□□□□□ -1.7
VPS41-207ENST00000439468 CENPVL1A0A0U1RR11 272 aa4.42□□□□□ -1.7
VPS41-207ENST00000439468 TCRBV7S2A1N4TA0A589 114 aa4.42□□□□□ -1.7
VPS41-207ENST00000439468 GAGE12BA1L429 117 aa4.42□□□□□ -1.7
VPS41-207ENST00000439468 GAGE12HA6NDE8 117 aa4.42□□□□□ -1.7
VPS41-207ENST00000439468 NT5C1B-RDH14C9J2C7 533 aa4.42□□□□□ -1.7
VPS41-207ENST00000439468 F2RL2O00254 374 aa4.42□□□□□ -1.7
VPS41-207ENST00000439468 AHSGP02765 367 aa4.42□□□□□ -1.7
VPS41-207ENST00000439468 SLC5A1P13866 664 aa4.42□□□□□ -1.7
VPS41-207ENST00000439468 TYRP14679 529 aa4.42□□□□□ -1.7
VPS41-207ENST00000439468 ATP5JP18859 108 aa4.42□□□□□ -1.7
VPS41-207ENST00000439468 KRT4P19013 534 aa4.42□□□□□ -1.7
VPS41-207ENST00000439468 ZFP36P26651 326 aaKnown RBP4.42□□□□□ -1.7
VPS41-207ENST00000439468 RAB1AP62820 205 aa4.42□□□□□ -1.7
VPS41-207ENST00000439468 PURAQ00577 322 aaKnown RBP4.42□□□□□ -1.7
VPS41-207ENST00000439468 SP140Q13342 867 aa4.42□□□□□ -1.7
VPS41-207ENST00000439468 UBE4AQ14139 1066 aa4.42□□□□□ -1.7
VPS41-207ENST00000439468 GADL1Q6ZQY3 521 aa4.42□□□□□ -1.7
VPS41-207ENST00000439468 MED25Q71SY5 747 aa4.42□□□□□ -1.7
VPS41-207ENST00000439468 UBE3BQ7Z3V4 1068 aa4.42□□□□□ -1.7
VPS41-207ENST00000439468 PPP1R3BQ86XI6 285 aa4.42□□□□□ -1.7
VPS41-207ENST00000439468 SUPT20HQ8NEM7 779 aa4.42□□□□□ -1.7
VPS41-207ENST00000439468 PMM1Q92871 262 aa4.42□□□□□ -1.7
VPS41-207ENST00000439468 CYFIP2Q96F07 1278 aa4.42□□□□□ -1.7
VPS41-207ENST00000439468 CDK5RAP3Q96JB5 506 aa4.42□□□□□ -1.7
VPS41-207ENST00000439468 AGAP2Q99490 1192 aa4.42□□□□□ -1.7
VPS41-207ENST00000439468 NAA15Q9BXJ9 866 aaKnown RBP4.42□□□□□ -1.7
VPS41-207ENST00000439468 WDR11Q9BZH6 1224 aa4.42□□□□□ -1.7
VPS41-207ENST00000439468 USP25Q9UHP3 1055 aa4.42□□□□□ -1.7
VPS41-207ENST00000439468 CPA4Q9UI42 421 aa4.42□□□□□ -1.7
VPS41-207ENST00000439468 POLHQ9Y253 713 aa4.42□□□□□ -1.7
VPS41-207ENST00000439468 USP19O94966 1318 aa4.42□□□□□ -1.7
VPS41-207ENST00000439468 A0A088AWK7 358 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 CFAP69A5D8W1 941 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 CAPN8A6NHC0 703 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 DRGXA6NNA5 263 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 FAM227AF5H4B4 570 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 PQBP1O60828 265 aaKnown RBP4.41□□□□□ -1.7
VPS41-207ENST00000439468 PPFIA2O75334 1257 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 GCP02774 474 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 RPLP2P05387 115 aaKnown RBP4.41□□□□□ -1.7
VPS41-207ENST00000439468 NBPF7P0C2Y1 421 aaPredicted RBP4.41□□□□□ -1.7
VPS41-207ENST00000439468 KITP10721 976 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 HDCP19113 662 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 DDX6P26196 483 aaKnown RBP eCLIP4.41□□□□□ -1.7
VPS41-207ENST00000439468 SLC6A4P31645 630 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 CTXN1P60606 82 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 GUCY1B3Q02153 619 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 SEMA5AQ13591 1074 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 HLTFQ14527 1009 aaKnown RBP eCLIP4.41□□□□□ -1.7
VPS41-207ENST00000439468 RAB39AQ14964 217 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 BEAN1Q3B7T3 259 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 HECTD2Q5U5R9 776 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 TSHZ3Q63HK5 1081 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 ZNF529Q6P280 563 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms