RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 SPATS2Q86XZ4 545 aaKnown RBP9.16□□□□□ -0.94
USP40-203ENST00000427112 HELQQ8TDG4 1101 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 MAML1Q92585 1016 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 ART4Q93070 314 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 MECRQ9BV79 373 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 DCLK3Q9C098 648 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 TUFT1Q9NNX1 390 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 IL1RAPL1Q9NZN1 696 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 SLC17A7Q9P2U7 560 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 PHTF1Q9UMS5 762 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 TCRBV7S3A2A0A539 114 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 A6NNZ2 444 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 ZNF862O60290 1169 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 CCNHP51946 323 aaPredicted RBP9.16□□□□□ -0.94
USP40-203ENST00000427112 GDF10P55107 478 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 SLMAPQ14BN4 828 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 Q3C1V9 767 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 TUBB8Q3ZCM7 444 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 NLRX1Q86UT6 975 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 TTLL6Q8N841 843 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 CEP120Q8N960 986 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 CHURC1Q8WUH1 139 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 TRAPPC12Q8WVT3 735 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 POLR3FQ9H1D9 316 aaPredicted RBP9.16□□□□□ -0.94
USP40-203ENST00000427112 WNT8AQ9H1J5 351 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 PCDHA3Q9Y5H8 950 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 A0A0A6YYK5 440 aaPredicted RBP9.15□□□□□ -0.94
USP40-203ENST00000427112 TP73O15350 636 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 NPR1P16066 1061 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 GTF2H1P32780 548 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 PHKA2P46019 1235 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 YWHAGP61981 247 aaKnown RBP eCLIP9.15□□□□□ -0.94
USP40-203ENST00000427112 ATP11AP98196 1134 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 BMPR2Q13873 1038 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 TAF1BQ53T94 588 aaPredicted RBP9.15□□□□□ -0.94
USP40-203ENST00000427112 ARMC3Q5W041 872 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 ACAD10Q6JQN1 1059 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 C1orf228Q6PIY5 440 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 TTC16Q8NEE8 873 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 RFWD2Q8NHY2 731 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 LRRC8CQ8TDW0 803 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 KIFAP3Q92845 792 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 MIEF2Q96C03 454 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 ATXN7L3BQ96GX2 97 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 NUDCD1Q96RS6 583 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 OSBPL1AQ9BXW6 950 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 CEP41Q9BYV8 373 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 TXLNGYQ9BZA5 131 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 DMAC2Q9NW81 257 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 ZNF70Q9UC06 446 aaPredicted RBP9.15□□□□□ -0.94
USP40-203ENST00000427112 FBXO40Q9UH90 709 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 MIF4GDA9UHW6 222 aaKnown RBP9.15□□□□□ -0.94
USP40-203ENST00000427112 EIF3DO15371 548 aaKnown RBP eCLIP9.15□□□□□ -0.94
USP40-203ENST00000427112 MAP3K13O43283 966 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 BAG2O95816 211 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 CST3P01034 146 aaPredicted RBP9.15□□□□□ -0.94
USP40-203ENST00000427112 SATB1Q01826 763 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 MMRN1Q13201 1228 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 SLC27A3Q5K4L6 730 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 ZCCHC23Q6ZST2 131 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 PIGWQ7Z7B1 504 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 FAM71AQ8IYT1 594 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 MCOLN2Q8IZK6 566 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 CLPTM1LQ96KA5 538 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 SYT11Q9BT88 431 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 SPATS2LQ9NUQ6 558 aaKnown RBP9.15□□□□□ -0.94
USP40-203ENST00000427112 HEY1Q9Y5J3 304 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 NUMBLQ9Y6R0 609 aa9.15□□□□□ -0.94
USP40-203ENST00000427112 POLGP54098 1239 aaPredicted RBP9.15□□□□□ -0.95
USP40-203ENST00000427112 KDSRQ06136 332 aa9.15□□□□□ -0.95
USP40-203ENST00000427112 XRCC4Q13426 336 aa9.15□□□□□ -0.95
USP40-203ENST00000427112 SETDB1Q15047 1291 aa9.15□□□□□ -0.95
USP40-203ENST00000427112 BMT2Q1RMZ1 405 aa9.15□□□□□ -0.95
USP40-203ENST00000427112 SH3PXD2AQ5TCZ1 1133 aa9.15□□□□□ -0.95
USP40-203ENST00000427112 PODNQ7Z5L7 613 aa9.15□□□□□ -0.95
USP40-203ENST00000427112 FMNL3Q8IVF7 1028 aa9.15□□□□□ -0.95
USP40-203ENST00000427112 FAM71DQ8N9W8 422 aa9.15□□□□□ -0.95
USP40-203ENST00000427112 SHKBP1Q8TBC3 707 aa9.15□□□□□ -0.95
USP40-203ENST00000427112 FBF1Q8TES7 1133 aa9.15□□□□□ -0.95
USP40-203ENST00000427112 RUBCNQ92622 972 aa9.15□□□□□ -0.95
USP40-203ENST00000427112 USP6NLQ92738 828 aa9.15□□□□□ -0.95
USP40-203ENST00000427112 PGM2Q96G03 612 aa9.15□□□□□ -0.95
USP40-203ENST00000427112 MAK16Q9BXY0 300 aaKnown RBP9.15□□□□□ -0.95
USP40-203ENST00000427112 MAGEB5Q9BZ81 275 aa9.15□□□□□ -0.95
USP40-203ENST00000427112 KDM4CQ9H3R0 1056 aa9.15□□□□□ -0.95
USP40-203ENST00000427112 APOBEC3GQ9HC16 384 aaKnown RBP9.15□□□□□ -0.95
USP40-203ENST00000427112 SLC17A6Q9P2U8 582 aa9.15□□□□□ -0.95
USP40-203ENST00000427112 LAMB1P07942 1786 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 TBX3O15119 743 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 VIL1P09327 827 aaKnown RBP9.14□□□□□ -0.95
USP40-203ENST00000427112 NUDT17P0C025 328 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 ADRA2BP18089 450 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 TAC1P20366 129 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 ALDH1B1P30837 517 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 ABCG1P45844 678 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 HMGCS2P54868 508 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 PPP2R5CQ13362 524 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 MSS51Q4VC12 460 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 THEMIS2Q5TEJ8 643 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 ANKLE1Q8NAG6 615 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms