RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 AMPD1P23109 780 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 ADRA1DP25100 572 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 THOC5Q13769 683 aaKnown RBP11.32□□□□□ -0.6
USP54-204ENST00000422491 P3H1Q32P28 736 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 RASIP1Q5U651 963 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 SYDE2Q5VT97 1194 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.32□□□□□ -0.6
USP54-204ENST00000422491 VPS52Q8N1B4 723 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 STRA6Q9BX79 667 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 VCX3BQ9H321 246 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 VCX3AQ9NNX9 186 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 ANAPC7Q9UJX3 599 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 FOCADQ5VW36 1801 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 ZBED4O75132 1171 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 FDX1P10109 184 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 RARBP10826 455 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 RALAP11233 206 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 PLS3P13797 630 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 MAPK4P31152 587 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 CETN2P41208 172 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 GCLMP48507 274 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 VAMP7P51809 220 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 RTP1P59025 263 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 CETN1Q12798 172 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 MYBPC2Q14324 1141 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 KRT72Q14CN4 511 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 LIN52Q52LA3 116 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.32□□□□□ -0.6
USP54-204ENST00000422491 SHC3Q92529 594 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 HEMGNQ9BXL5 484 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 KCNK13Q9HB14 408 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 FBXO6Q9NRD1 293 aaPredicted RBP11.32□□□□□ -0.6
USP54-204ENST00000422491 LARSQ9P2J5 1176 aaKnown RBP11.32□□□□□ -0.6
USP54-204ENST00000422491 ATXN10Q9UBB4 475 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 A0A0G2JND7 137 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 GRIN3BO60391 1043 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 SLITRK3O94933 977 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 PENKP01210 267 aaPredicted RBP11.31□□□□□ -0.6
USP54-204ENST00000422491 CYP11B1P15538 503 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 KRT4P19013 534 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 SERPINB3P29508 390 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 SREBF1P36956 1147 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 PIK3CAP42336 1068 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 CDK7P50613 346 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 RAP1GDS1P52306 607 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 LSAMPQ13449 338 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 STXBP4Q6ZWJ1 553 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 KLHL23Q8NBE8 558 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 CYP2W1Q8TAV3 490 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 ARHGEF4Q9NR80 690 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 CHCHD3Q9NX63 227 aaKnown RBP11.31□□□□□ -0.6
USP54-204ENST00000422491 STK32BQ9NY57 414 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 SLC24A2Q9UI40 661 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 CIITAP33076 1130 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 SLC1A1P43005 524 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 CDK16Q00536 496 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 PPP2R5CQ13362 524 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 ODR4Q5SWX8 454 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 ACAD10Q6JQN1 1059 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 PDCD7Q8N8D1 485 aaKnown RBP11.31□□□□□ -0.6
USP54-204ENST00000422491 PLEKHO2Q8TD55 490 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 DDX1Q92499 740 aaKnown RBP11.31□□□□□ -0.6
USP54-204ENST00000422491 FAM163AQ96GL9 167 aaPredicted RBP11.31□□□□□ -0.6
USP54-204ENST00000422491 IWS1Q96ST2 819 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 TRIM55Q9BYV6 548 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 ADAM33Q9BZ11 813 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 OSBPL8Q9BZF1 889 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 PSMC3IPQ9P2W1 217 aaPredicted RBP11.31□□□□□ -0.6
USP54-204ENST00000422491 ANGPTL2Q9UKU9 493 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 COMMD3-BMI1R4GMX3 469 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 GAKO14976 1311 aa11.31□□□□□ -0.6
USP54-204ENST00000422491 WDR91A4D1P6 747 aa11.3□□□□□ -0.6
USP54-204ENST00000422491 F8W8V4 182 aa11.3□□□□□ -0.6
USP54-204ENST00000422491 DNALI1O14645 258 aaPredicted RBP11.3□□□□□ -0.6
USP54-204ENST00000422491 DSG1Q02413 1049 aa11.3□□□□□ -0.6
USP54-204ENST00000422491 PTP4A2Q12974 167 aa11.3□□□□□ -0.6
USP54-204ENST00000422491 USP4Q13107 963 aa11.3□□□□□ -0.6
USP54-204ENST00000422491 HP1BP3Q5SSJ5 553 aaPredicted RBP11.3□□□□□ -0.6
USP54-204ENST00000422491 IZUMO2Q6UXV1 221 aa11.3□□□□□ -0.6
USP54-204ENST00000422491 TRIM74Q86UV6 250 aa11.3□□□□□ -0.6
USP54-204ENST00000422491 TRIM73Q86UV7 250 aa11.3□□□□□ -0.6
USP54-204ENST00000422491 CCDC24Q8N4L8 307 aa11.3□□□□□ -0.6
USP54-204ENST00000422491 GLIS1Q8NBF1 620 aa11.3□□□□□ -0.6
USP54-204ENST00000422491 GPR101Q96P66 508 aaPredicted RBP11.3□□□□□ -0.6
USP54-204ENST00000422491 PPCSQ9HAB8 311 aa11.3□□□□□ -0.6
USP54-204ENST00000422491 TUFT1Q9NNX1 390 aa11.3□□□□□ -0.6
USP54-204ENST00000422491 TISP43B9A030 160 aa11.3□□□□□ -0.6
USP54-204ENST00000422491 ESRRAP11474 423 aaPredicted RBP11.3□□□□□ -0.6
USP54-204ENST00000422491 BMP3P12645 472 aa11.3□□□□□ -0.6
USP54-204ENST00000422491 ANPEPP15144 967 aa11.3□□□□□ -0.6
USP54-204ENST00000422491 CRABP2P29373 138 aa11.3□□□□□ -0.6
USP54-204ENST00000422491 ARFIP2P53365 341 aa11.3□□□□□ -0.6
USP54-204ENST00000422491 FAM91A1Q658Y4 838 aa11.3□□□□□ -0.6
USP54-204ENST00000422491 TPH2Q8IWU9 490 aa11.3□□□□□ -0.6
USP54-204ENST00000422491 ECSITQ9BQ95 431 aa11.3□□□□□ -0.6
USP54-204ENST00000422491 TMEM120AQ9BXJ8 343 aa11.3□□□□□ -0.6
USP54-204ENST00000422491 VPS11Q9H270 941 aa11.3□□□□□ -0.6
USP54-204ENST00000422491 MANSC1Q9H8J5 431 aa11.3□□□□□ -0.6
USP54-204ENST00000422491 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.3□□□□□ -0.6
USP54-204ENST00000422491 RPS6KL1Q9Y6S9 549 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 119.7 ms