RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 GPR88Q9GZN0 384 aa15.3■□□□□ 0.04
SF3B1-204ENST00000414963 CYP3A43Q9HB55 503 aa15.3■□□□□ 0.04
SF3B1-204ENST00000414963 GOLGA2P5Q9HBQ8 144 aa15.3■□□□□ 0.04
SF3B1-204ENST00000414963 NLRC4Q9NPP4 1024 aa15.3■□□□□ 0.04
SF3B1-204ENST00000414963 AIPL1Q9NZN9 384 aa15.3■□□□□ 0.04
SF3B1-204ENST00000414963 CNTN6Q9UQ52 1028 aa15.3■□□□□ 0.04
SF3B1-204ENST00000414963 F8VZ95 297 aa15.29■□□□□ 0.04
SF3B1-204ENST00000414963 TMEM189-UBE2V1I3L0A0 370 aa15.29■□□□□ 0.04
SF3B1-204ENST00000414963 PODXLO00592 558 aa15.29■□□□□ 0.04
SF3B1-204ENST00000414963 ACO1P21399 889 aaKnown RBP15.29■□□□□ 0.04
SF3B1-204ENST00000414963 FECHP22830 423 aa15.29■□□□□ 0.04
SF3B1-204ENST00000414963 ASPAP45381 313 aa15.29■□□□□ 0.04
SF3B1-204ENST00000414963 AARSP49588 968 aaKnown RBP eCLIP15.29■□□□□ 0.04
SF3B1-204ENST00000414963 TAF6P49848 677 aa15.29■□□□□ 0.04
SF3B1-204ENST00000414963 GATMP50440 423 aa15.29■□□□□ 0.04
SF3B1-204ENST00000414963 CLCNKBP51801 687 aa15.29■□□□□ 0.04
SF3B1-204ENST00000414963 LILRA4P59901 499 aa15.29■□□□□ 0.04
SF3B1-204ENST00000414963 RNASELQ05823 741 aaKnown RBP15.29■□□□□ 0.04
SF3B1-204ENST00000414963 WDR72Q3MJ13 1102 aa15.29■□□□□ 0.04
SF3B1-204ENST00000414963 SV2CQ496J9 727 aa15.29■□□□□ 0.04
SF3B1-204ENST00000414963 UBR7Q8N806 425 aa15.29■□□□□ 0.04
SF3B1-204ENST00000414963 KAT5Q92993 513 aa15.29■□□□□ 0.04
SF3B1-204ENST00000414963 TMEM175Q9BSA9 504 aa15.29■□□□□ 0.04
SF3B1-204ENST00000414963 RC3H2Q9HBD1 1191 aaKnown RBP15.29■□□□□ 0.04
SF3B1-204ENST00000414963 ABHD10Q9NUJ1 306 aa15.29■□□□□ 0.04
SF3B1-204ENST00000414963 TRIP11Q15643 1979 aa15.29■□□□□ 0.04
SF3B1-204ENST00000414963 CASTOR2A6NHX0 329 aa15.28■□□□□ 0.04
SF3B1-204ENST00000414963 LRRC53A6NM62 1247 aa15.28■□□□□ 0.04
SF3B1-204ENST00000414963 TBKBP1A7MCY6 615 aa15.28■□□□□ 0.04
SF3B1-204ENST00000414963 KPNA7A9QM74 516 aa15.28■□□□□ 0.04
SF3B1-204ENST00000414963 FOXN3O00409 490 aaPredicted RBP15.28■□□□□ 0.04
SF3B1-204ENST00000414963 SPTLC1O15269 473 aa15.28■□□□□ 0.04
SF3B1-204ENST00000414963 B4GALT3O60512 393 aa15.28■□□□□ 0.04
SF3B1-204ENST00000414963 UPP2O95045 317 aa15.28■□□□□ 0.04
SF3B1-204ENST00000414963 STAT1P42224 750 aa15.28■□□□□ 0.04
SF3B1-204ENST00000414963 CDK17Q00537 523 aa15.28■□□□□ 0.04
SF3B1-204ENST00000414963 RAPGEF1Q13905 1077 aa15.28■□□□□ 0.04
SF3B1-204ENST00000414963 MEA1Q16626 185 aa15.28■□□□□ 0.04
SF3B1-204ENST00000414963 CD300LGQ6UXG3 332 aa15.28■□□□□ 0.04
SF3B1-204ENST00000414963 DPH6Q7L8W6 267 aa15.28■□□□□ 0.04
SF3B1-204ENST00000414963 FAM71AQ8IYT1 594 aa15.28■□□□□ 0.04
SF3B1-204ENST00000414963 CMTR2Q8IYT2 770 aaKnown RBP15.28■□□□□ 0.04
SF3B1-204ENST00000414963 LRRC43Q8N309 656 aa15.28■□□□□ 0.04
SF3B1-204ENST00000414963 TTC39CQ8N584 583 aa15.28■□□□□ 0.04
SF3B1-204ENST00000414963 ELMO3Q96BJ8 720 aa15.28■□□□□ 0.04
SF3B1-204ENST00000414963 FAM193BQ96PV7 902 aaPredicted RBP15.28■□□□□ 0.04
SF3B1-204ENST00000414963 SPAG5Q96R06 1193 aa15.28■□□□□ 0.04
SF3B1-204ENST00000414963 MTIF3Q9H2K0 278 aaKnown RBP15.28■□□□□ 0.04
SF3B1-204ENST00000414963 NRDE2Q9H7Z3 1164 aa15.28■□□□□ 0.04
SF3B1-204ENST00000414963 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.28■□□□□ 0.048e-7■■■■■ 27.9
SF3B1-204ENST00000414963 PCDH10Q9P2E7 1040 aa15.28■□□□□ 0.04
SF3B1-204ENST00000414963 CARNS1A5YM72 827 aa15.27■□□□□ 0.04
SF3B1-204ENST00000414963 GJB5O95377 273 aa15.27■□□□□ 0.04
SF3B1-204ENST00000414963 PTMAP06454 111 aaKnown RBP15.27■□□□□ 0.04
SF3B1-204ENST00000414963 SOX5P35711 763 aa15.27■□□□□ 0.04
SF3B1-204ENST00000414963 YWHAEP62258 255 aaKnown RBP15.27■□□□□ 0.04
SF3B1-204ENST00000414963 TNNC1P63316 161 aa15.27■□□□□ 0.04
SF3B1-204ENST00000414963 HTRA4P83105 476 aaPredicted RBP15.27■□□□□ 0.04
SF3B1-204ENST00000414963 ARHGAP44Q17R89 818 aa15.27■□□□□ 0.04
SF3B1-204ENST00000414963 TSR1Q2NL82 804 aaKnown RBP15.27■□□□□ 0.04
SF3B1-204ENST00000414963 SFMBT2Q5VUG0 894 aa15.27■□□□□ 0.04
SF3B1-204ENST00000414963 IRF2BP2Q7Z5L9 587 aa15.27■□□□□ 0.04
SF3B1-204ENST00000414963 LRRC8AQ8IWT6 810 aa15.27■□□□□ 0.04
SF3B1-204ENST00000414963 SLC9A7Q96T83 725 aa15.27■□□□□ 0.04
SF3B1-204ENST00000414963 ARID3AQ99856 593 aa15.27■□□□□ 0.04
SF3B1-204ENST00000414963 PAAF1Q9BRP4 392 aa15.27■□□□□ 0.04
SF3B1-204ENST00000414963 CXXC1Q9P0U4 656 aaPredicted RBP15.27■□□□□ 0.04
SF3B1-204ENST00000414963 NXF1Q9UBU9 619 aaKnown RBP15.27■□□□□ 0.04
SF3B1-204ENST00000414963 POLIQ9UNA4 740 aa15.27■□□□□ 0.04
SF3B1-204ENST00000414963 COL4A6Q14031 1691 aa15.26■□□□□ 0.03
SF3B1-204ENST00000414963 ZBBXA8MT70 800 aa15.26■□□□□ 0.03
SF3B1-204ENST00000414963 TACC1O75410 805 aa15.26■□□□□ 0.03
SF3B1-204ENST00000414963 B3GAT3O94766 335 aa15.26■□□□□ 0.03
SF3B1-204ENST00000414963 ALDH2P05091 517 aa15.26■□□□□ 0.03
SF3B1-204ENST00000414963 CCDC172P0C7W6 258 aa15.26■□□□□ 0.03
SF3B1-204ENST00000414963 FERP16591 822 aa15.26■□□□□ 0.03
SF3B1-204ENST00000414963 PRKCIP41743 596 aa15.26■□□□□ 0.03
SF3B1-204ENST00000414963 GOLGA8FQ08AF8 430 aa15.26■□□□□ 0.03
SF3B1-204ENST00000414963 GOLGA8DPQ0D2H9 430 aa15.26■□□□□ 0.03
SF3B1-204ENST00000414963 INCA1Q0VD86 236 aa15.26■□□□□ 0.03
SF3B1-204ENST00000414963 SOWAHAQ2M3V2 549 aa15.26■□□□□ 0.03
SF3B1-204ENST00000414963 WDR59Q6PJI9 974 aa15.26■□□□□ 0.03
SF3B1-204ENST00000414963 TOP6BLQ8N6T0 577 aa15.26■□□□□ 0.03
SF3B1-204ENST00000414963 C3orf58Q8NDZ4 430 aa15.26■□□□□ 0.03
SF3B1-204ENST00000414963 SPATA18Q8TC71 538 aa15.26■□□□□ 0.03
SF3B1-204ENST00000414963 SDCBP2Q9H190 292 aa15.26■□□□□ 0.03
SF3B1-204ENST00000414963 CWH43Q9H720 699 aa15.26■□□□□ 0.03
SF3B1-204ENST00000414963 CISHQ9NSE2 258 aa15.26■□□□□ 0.03
SF3B1-204ENST00000414963 ZNHIT6Q9NWK9 470 aaKnown RBP15.26■□□□□ 0.03
SF3B1-204ENST00000414963 CACNG4Q9UBN1 327 aa15.26■□□□□ 0.03
SF3B1-204ENST00000414963 DNAJB4Q9UDY4 337 aa15.26■□□□□ 0.03
SF3B1-204ENST00000414963 SNX9Q9Y5X1 595 aa15.26■□□□□ 0.03
SF3B1-204ENST00000414963 BZW2Q9Y6E2 419 aaKnown RBP15.26■□□□□ 0.03
SF3B1-204ENST00000414963 SLC4A7Q9Y6M7 1214 aa15.26■□□□□ 0.03
SF3B1-204ENST00000414963 M0QZQ0 153 aa15.25■□□□□ 0.03
SF3B1-204ENST00000414963 GALTP07902 379 aa15.25■□□□□ 0.03
SF3B1-204ENST00000414963 WEE2P0C1S8 567 aa15.25■□□□□ 0.03
SF3B1-204ENST00000414963 IGFBP6P24592 240 aaPredicted RBP15.25■□□□□ 0.03
SF3B1-204ENST00000414963 DEKP35659 375 aaKnown RBP15.25■□□□□ 0.03
SF3B1-204ENST00000414963 MAGEA10P43363 369 aaPredicted RBP15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms