RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 PNMA6AP0CW24 399 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-205ENST00000414879 SLC7A5Q01650 507 aa12.59□□□□□ -0.39
PTPRF-205ENST00000414879 DEUP1Q05D60 604 aa12.59□□□□□ -0.39
PTPRF-205ENST00000414879 NME3Q13232 169 aa12.59□□□□□ -0.39
PTPRF-205ENST00000414879 NFE2Q16621 373 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-205ENST00000414879 GPAT2Q6NUI2 795 aa12.59□□□□□ -0.39
PTPRF-205ENST00000414879 EFHD1Q9BUP0 239 aa12.59□□□□□ -0.39
PTPRF-205ENST00000414879 PRDM16Q9HAZ2 1276 aa12.59□□□□□ -0.39
PTPRF-205ENST00000414879 MRPL40Q9NQ50 206 aaKnown RBP12.59□□□□□ -0.39
PTPRF-205ENST00000414879 POLIQ9UNA4 740 aa12.59□□□□□ -0.39
PTPRF-205ENST00000414879 ARHGAP42A6NI28 874 aa12.59□□□□□ -0.39
PTPRF-205ENST00000414879 ATP1A1P05023 1023 aaKnown RBP12.59□□□□□ -0.39
PTPRF-205ENST00000414879 FNTAP49354 379 aa12.59□□□□□ -0.39
PTPRF-205ENST00000414879 RPL10AP62906 217 aaKnown RBP12.59□□□□□ -0.39
PTPRF-205ENST00000414879 CERS5Q8N5B7 392 aa12.59□□□□□ -0.39
PTPRF-205ENST00000414879 VCPIP1Q96JH7 1222 aa12.59□□□□□ -0.39
PTPRF-205ENST00000414879 ZNF668Q96K58 619 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-205ENST00000414879 KCNMB3Q9NPA1 279 aa12.59□□□□□ -0.39
PTPRF-205ENST00000414879 PKD1L3Q7Z443 1732 aa12.59□□□□□ -0.39
PTPRF-205ENST00000414879 GOLGA8MH3BSY2 632 aa12.59□□□□□ -0.39
PTPRF-205ENST00000414879 ACKR2O00590 384 aa12.59□□□□□ -0.39
PTPRF-205ENST00000414879 DDX5P17844 614 aaKnown RBP12.59□□□□□ -0.39
PTPRF-205ENST00000414879 STIP1P31948 543 aaKnown RBP12.59□□□□□ -0.39
PTPRF-205ENST00000414879 RTP1P59025 263 aa12.59□□□□□ -0.39
PTPRF-205ENST00000414879 MCL1Q07820 350 aa12.59□□□□□ -0.39
PTPRF-205ENST00000414879 ZDHHC17Q8IUH5 632 aa12.59□□□□□ -0.39
PTPRF-205ENST00000414879 USP13Q92995 863 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-205ENST00000414879 CDK5RAP1Q96SZ6 601 aaKnown RBP12.59□□□□□ -0.39
PTPRF-205ENST00000414879 CYTH2Q99418 400 aa12.59□□□□□ -0.39
PTPRF-205ENST00000414879 SERPINI1Q99574 410 aa12.59□□□□□ -0.39
PTPRF-205ENST00000414879 DDX47Q9H0S4 455 aaKnown RBP12.59□□□□□ -0.39
PTPRF-205ENST00000414879 SLITRK3O94933 977 aa12.59□□□□□ -0.39
PTPRF-205ENST00000414879 ACSL3O95573 720 aa12.59□□□□□ -0.39
PTPRF-205ENST00000414879 COPS2P61201 443 aa12.59□□□□□ -0.39
PTPRF-205ENST00000414879 PDK2Q15119 407 aa12.59□□□□□ -0.39
PTPRF-205ENST00000414879 HIF1AQ16665 826 aa12.59□□□□□ -0.39
PTPRF-205ENST00000414879 CCDC38Q502W7 563 aa12.59□□□□□ -0.39
PTPRF-205ENST00000414879 FBXO16Q8IX29 292 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-205ENST00000414879 TOMM70O94826 608 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 KPNA1P52294 538 aaPredicted RBP12.58□□□□□ -0.4
PTPRF-205ENST00000414879 GCNT1Q02742 428 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 CCDC15Q0P6D6 951 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 AP1B1Q10567 949 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 RBBP5Q15291 538 aaKnown RBP12.58□□□□□ -0.4
PTPRF-205ENST00000414879 FSCBQ5H9T9 825 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 FBXO38Q6PIJ6 1188 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 RIBC1Q8N443 379 aaPredicted RBP12.58□□□□□ -0.4
PTPRF-205ENST00000414879 GDAP1Q8TB36 358 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 SDCCAG3Q96C92 435 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 TRIM55Q9BYV6 548 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 SMYD2Q9NRG4 433 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 UBIAD1Q9Y5Z9 338 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 AHDC1Q5TGY3 1603 aaPredicted RBP12.58□□□□□ -0.4
PTPRF-205ENST00000414879 RASA4BC9J798 803 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 RASA4O43374 803 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 SEC31AO94979 1220 aaKnown RBP12.58□□□□□ -0.4
PTPRF-205ENST00000414879 BCAT1P54687 386 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 LAMTOR4Q0VGL1 99 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 MAPK8IP2Q13387 824 aaPredicted RBP12.58□□□□□ -0.4
PTPRF-205ENST00000414879 TTC23LQ6PF05 361 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 MMGT1Q8N4V1 131 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 TRIM54Q9BYV2 358 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 OSBPL8Q9BZF1 889 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 A1CFQ9NQ94 594 aaKnown RBP12.58□□□□□ -0.4
PTPRF-205ENST00000414879 NAGPAQ9UK23 515 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 ADCY3O60266 1144 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 TADA3O75528 432 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 ITGB3P05106 788 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 THPOP40225 353 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 ZNF135P52742 658 aaPredicted RBP12.58□□□□□ -0.4
PTPRF-205ENST00000414879 PID1Q7Z2X4 250 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 ANKRD23Q86SG2 305 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 TSSK1BQ9BXA7 367 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 ALDH1A3P47895 512 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 IFNAR2P48551 515 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 ARSEP51690 589 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 VGLL4Q14135 290 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 COBLL1Q53SF7 1204 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 JADE1Q6IE81 842 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 CCNJLQ8IV13 435 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 ATP6V0D2Q8N8Y2 350 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 CALML6Q8TD86 181 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 COG1Q8WTW3 980 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 LRGUKQ96M69 825 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 FUCA2Q9BTY2 467 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 SEMA6BQ9H3T3 888 aa12.58□□□□□ -0.4
PTPRF-205ENST00000414879 SMG5Q9UPR3 1016 aaKnown RBP12.58□□□□□ -0.4
PTPRF-205ENST00000414879 UNCXA6NJT0 531 aa12.57□□□□□ -0.4
PTPRF-205ENST00000414879 CYTH3O43739 400 aa12.57□□□□□ -0.4
PTPRF-205ENST00000414879 SRGAP2O75044 1071 aa12.57□□□□□ -0.4
PTPRF-205ENST00000414879 ALDH7A1P49419 539 aaKnown RBP12.57□□□□□ -0.4
PTPRF-205ENST00000414879 PRAMEP78395 509 aa12.57□□□□□ -0.4
PTPRF-205ENST00000414879 ZNF211Q13398 564 aaPredicted RBP12.57□□□□□ -0.4
PTPRF-205ENST00000414879 YAF2Q8IY57 180 aa12.57□□□□□ -0.4
PTPRF-205ENST00000414879 PPHLN1Q8NEY8 458 aaKnown RBP12.57□□□□□ -0.4
PTPRF-205ENST00000414879 PNMA5Q96PV4 448 aa12.57□□□□□ -0.4
PTPRF-205ENST00000414879 ROPN1BQ9BZX4 212 aaPredicted RBP12.57□□□□□ -0.4
PTPRF-205ENST00000414879 ROPN1Q9HAT0 212 aaPredicted RBP12.57□□□□□ -0.4
PTPRF-205ENST00000414879 ALG6Q9Y672 507 aa12.57□□□□□ -0.4
PTPRF-205ENST00000414879 COL18A1P39060 1754 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms