RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 EXOC3L1Q86VI1 746 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 RHPN2Q8IUC4 686 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 SPOCK2Q92563 424 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 P3H4Q92791 437 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 UTP6Q9NYH9 597 aaKnown RBP12.6□□□□□ -0.39
HMGB1-206ENST00000405805 MYO5AQ9Y4I1 1855 aaKnown RBP12.6□□□□□ -0.39
HMGB1-206ENST00000405805 COL14A1Q05707 1796 aaKnown RBP12.6□□□□□ -0.39
HMGB1-206ENST00000405805 CPP00450 1065 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 TNFRSF8P28908 595 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 ORC1Q13415 861 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 OTOP1Q7RTM1 612 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 ARHGAP24Q8N264 748 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 CERKQ8TCT0 537 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 NMD3Q96D46 503 aaKnown RBP12.59□□□□□ -0.39
HMGB1-206ENST00000405805 GALNT8Q9NY28 637 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 NYAP2Q9P242 653 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 SAE1Q9UBE0 346 aaPredicted RBP12.59□□□□□ -0.39
HMGB1-206ENST00000405805 SEL1LQ9UBV2 794 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 SLC12A6Q9UHW9 1150 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 SUGT1Q9Y2Z0 365 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 ZHX2Q9Y6X8 837 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 GAKO14976 1311 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 K7ERI5 159 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 STAM2O75886 525 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 ETS1P14921 441 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 CCND1P24385 295 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 ROR2Q01974 943 aaKnown RBP12.59□□□□□ -0.39
HMGB1-206ENST00000405805 GRAMD1BQ3KR37 738 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 TTLL6Q8N841 843 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 DRC3Q9H069 523 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 PPARGC1AQ9UBK2 798 aaKnown RBP12.59□□□□□ -0.39
HMGB1-206ENST00000405805 NUB1Q9Y5A7 615 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 SCINQ9Y6U3 715 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 AKAP11Q9UKA4 1901 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 TJP1Q07157 1748 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 I3L4J1 428 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 NFIBO00712 420 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 ADCY3O60266 1144 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 ZBED4O75132 1171 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 ATP4AP20648 1035 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 PRKCIP41743 596 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 PRAMEF18Q5VWM3 479 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 ERICH1Q86X53 443 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 WDR18Q9BV38 432 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 TUFT1Q9NNX1 390 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 HEY1Q9Y5J3 304 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 MYH6P13533 1939 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 E2F8A0AVK6 867 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 CFAP73A6NFT4 308 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 BANF1O75531 89 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 TRAIPQ9BWF2 469 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 SHCBP1LQ9BZQ2 653 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 SMYD3Q9H7B4 428 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 TXNDC16Q9P2K2 825 aa12.59□□□□□ -0.39
HMGB1-206ENST00000405805 MYH14Q7Z406 1995 aaKnown RBP12.58□□□□□ -0.39
HMGB1-206ENST00000405805 PFASO15067 1338 aa12.58□□□□□ -0.4
HMGB1-206ENST00000405805 ADAMTS7Q9UKP4 1686 aa12.58□□□□□ -0.4
HMGB1-206ENST00000405805 FAM47DPA6NHR8 397 aa12.58□□□□□ -0.4
HMGB1-206ENST00000405805 TBX3O15119 743 aa12.58□□□□□ -0.4
HMGB1-206ENST00000405805 CNGA2Q16280 664 aa12.58□□□□□ -0.4
HMGB1-206ENST00000405805 CENPUQ71F23 418 aa12.58□□□□□ -0.4
HMGB1-206ENST00000405805 TMEM110Q86TL2 294 aa12.58□□□□□ -0.4
HMGB1-206ENST00000405805 PPM1NQ8N819 430 aa12.58□□□□□ -0.4
HMGB1-206ENST00000405805 PCDHB18PQ96TA0 734 aa12.58□□□□□ -0.4
HMGB1-206ENST00000405805 MSTO1Q9BUK6 570 aa12.58□□□□□ -0.4
HMGB1-206ENST00000405805 C12orf65Q9H3J6 166 aaKnown RBP12.58□□□□□ -0.4
HMGB1-206ENST00000405805 ITIH2P19823 946 aa12.58□□□□□ -0.4
HMGB1-206ENST00000405805 KDSRQ06136 332 aa12.58□□□□□ -0.4
HMGB1-206ENST00000405805 CYP4A22Q5TCH4 519 aa12.58□□□□□ -0.4
HMGB1-206ENST00000405805 LVRNQ6Q4G3 990 aa12.58□□□□□ -0.4
HMGB1-206ENST00000405805 CCDC80Q76M96 950 aa12.58□□□□□ -0.4
HMGB1-206ENST00000405805 TRMT10CQ7L0Y3 403 aaKnown RBP12.58□□□□□ -0.4
HMGB1-206ENST00000405805 RHOT1Q8IXI2 618 aa12.58□□□□□ -0.4
HMGB1-206ENST00000405805 CCDC124Q96CT7 223 aaKnown RBP12.58□□□□□ -0.4
HMGB1-206ENST00000405805 POLR3CQ9BUI4 534 aaPredicted RBP12.58□□□□□ -0.4
HMGB1-206ENST00000405805 MRPL47Q9HD33 250 aaKnown RBP12.58□□□□□ -0.4
HMGB1-206ENST00000405805 GOLGB1Q14789 3259 aaKnown RBP12.58□□□□□ -0.4
HMGB1-206ENST00000405805 BCL9LQ86UU0 1499 aa12.58□□□□□ -0.4
HMGB1-206ENST00000405805 SLIT2O94813 1529 aa12.58□□□□□ -0.4
HMGB1-206ENST00000405805 SNX3O60493 162 aa12.58□□□□□ -0.4
HMGB1-206ENST00000405805 PDE5AO76074 875 aa12.58□□□□□ -0.4
HMGB1-206ENST00000405805 TMCC1O94876 653 aa12.58□□□□□ -0.4
HMGB1-206ENST00000405805 KRT16P08779 473 aa12.58□□□□□ -0.4
HMGB1-206ENST00000405805 TTLL12Q14166 644 aaPredicted RBP12.58□□□□□ -0.4
HMGB1-206ENST00000405805 DCAF12L1Q5VU92 463 aa12.58□□□□□ -0.4
HMGB1-206ENST00000405805 ETNPPLQ8TBG4 499 aa12.58□□□□□ -0.4
HMGB1-206ENST00000405805 ZDHHC15Q96MV8 337 aa12.58□□□□□ -0.4
HMGB1-206ENST00000405805 MCEEQ96PE7 176 aa12.58□□□□□ -0.4
HMGB1-206ENST00000405805 MPHOSPH6Q99547 160 aaKnown RBP12.58□□□□□ -0.4
HMGB1-206ENST00000405805 TMEM121Q9BTD3 319 aa12.58□□□□□ -0.4
HMGB1-206ENST00000405805 TTLL3Q9Y4R7 772 aa12.58□□□□□ -0.4
HMGB1-206ENST00000405805 INO80B-WBP1J3KQ70 363 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 WEE2P0C1S8 567 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 TMEM191BP0C7N4 346 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 KRT4P19013 534 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 PSMA2P25787 234 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 MAN1A1P33908 653 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 PHBP35232 272 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 CDR2Q01850 454 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 FAXCQ5TGI0 409 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms