RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 LRRC52Q8N7C0 313 aa17.16■□□□□ 0.34
HMGA1-204ENST00000401473 FBXL13Q8NEE6 735 aa17.16■□□□□ 0.34
HMGA1-204ENST00000401473 LMO3Q8TAP4 145 aa17.16■□□□□ 0.34
HMGA1-204ENST00000401473 SPPL3Q8TCT6 385 aa17.16■□□□□ 0.34
HMGA1-204ENST00000401473 HPDLQ96IR7 371 aa17.16■□□□□ 0.34
HMGA1-204ENST00000401473 RAB20Q9NX57 234 aa17.16■□□□□ 0.34
HMGA1-204ENST00000401473 RWDD3Q9Y3V2 267 aa17.16■□□□□ 0.34
HMGA1-204ENST00000401473 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.16■□□□□ 0.34
HMGA1-204ENST00000401473 PRRC2BQ5JSZ5 2229 aaKnown RBP17.16■□□□□ 0.34
HMGA1-204ENST00000401473 TMEM265A0A087WTH1 108 aa17.16■□□□□ 0.34
HMGA1-204ENST00000401473 KPNA7A9QM74 516 aa17.16■□□□□ 0.34
HMGA1-204ENST00000401473 RB1P06400 928 aa17.16■□□□□ 0.34
HMGA1-204ENST00000401473 COPB1P53618 953 aaKnown RBP17.16■□□□□ 0.34
HMGA1-204ENST00000401473 TRPC3Q13507 836 aa17.16■□□□□ 0.34
HMGA1-204ENST00000401473 CAMK1Q14012 370 aa17.16■□□□□ 0.34
HMGA1-204ENST00000401473 ZNF697Q5TEC3 545 aa17.16■□□□□ 0.34
HMGA1-204ENST00000401473 SPOPLQ6IQ16 392 aa17.16■□□□□ 0.34
HMGA1-204ENST00000401473 FUT10Q6P4F1 479 aa17.16■□□□□ 0.34
HMGA1-204ENST00000401473 RNF168Q8IYW5 571 aaPredicted RBP17.16■□□□□ 0.34
HMGA1-204ENST00000401473 TMEM169Q96HH4 297 aa17.16■□□□□ 0.34
HMGA1-204ENST00000401473 B3GALT6Q96L58 329 aa17.16■□□□□ 0.34
HMGA1-204ENST00000401473 NAP1L5Q96NT1 182 aaPredicted RBP17.16■□□□□ 0.34
HMGA1-204ENST00000401473 CRACR2AQ9BSW2 395 aa17.16■□□□□ 0.34
HMGA1-204ENST00000401473 PRDM12Q9H4Q4 367 aa17.16■□□□□ 0.34
HMGA1-204ENST00000401473 NUB1Q9Y5A7 615 aa17.16■□□□□ 0.34
HMGA1-204ENST00000401473 C5orf42Q9H799 3197 aa17.15■□□□□ 0.34
HMGA1-204ENST00000401473 H3BNC9 293 aa17.15■□□□□ 0.34
HMGA1-204ENST00000401473 GRM6O15303 877 aa17.15■□□□□ 0.34
HMGA1-204ENST00000401473 LPXNO60711 386 aa17.15■□□□□ 0.34
HMGA1-204ENST00000401473 ASS1P00966 412 aaKnown RBP17.15■□□□□ 0.34
HMGA1-204ENST00000401473 PPM1AP35813 382 aa17.15■□□□□ 0.34
HMGA1-204ENST00000401473 TAF6P49848 677 aa17.15■□□□□ 0.34
HMGA1-204ENST00000401473 FBXO22Q8NEZ5 403 aa17.15■□□□□ 0.34
HMGA1-204ENST00000401473 SAMD11Q96NU1 681 aa17.15■□□□□ 0.34
HMGA1-204ENST00000401473 APOBEC3GQ9HC16 384 aaKnown RBP17.15■□□□□ 0.34
HMGA1-204ENST00000401473 PIK3CAP42336 1068 aa17.14■□□□□ 0.33
HMGA1-204ENST00000401473 MYL7Q01449 175 aa17.14■□□□□ 0.33
HMGA1-204ENST00000401473 SGSM1Q2NKQ1 1148 aa17.14■□□□□ 0.33
HMGA1-204ENST00000401473 WDR72Q3MJ13 1102 aa17.14■□□□□ 0.33
HMGA1-204ENST00000401473 DEFB123Q8N688 67 aa17.14■□□□□ 0.33
HMGA1-204ENST00000401473 GDPD5Q8WTR4 605 aa17.14■□□□□ 0.33
HMGA1-204ENST00000401473 SUSD3Q96L08 255 aa17.14■□□□□ 0.33
HMGA1-204ENST00000401473 SENP8Q96LD8 212 aa17.14■□□□□ 0.33
HMGA1-204ENST00000401473 VRTNQ9H8Y1 702 aa17.14■□□□□ 0.33
HMGA1-204ENST00000401473 PES1O00541 588 aaKnown RBP17.14■□□□□ 0.33
HMGA1-204ENST00000401473 P4HA2O15460 535 aa17.14■□□□□ 0.33
HMGA1-204ENST00000401473 ERVFC1P60507 584 aa17.14■□□□□ 0.33
HMGA1-204ENST00000401473 KRT17Q04695 432 aa17.14■□□□□ 0.33
HMGA1-204ENST00000401473 KCNMA1Q12791 1236 aa17.14■□□□□ 0.33
HMGA1-204ENST00000401473 DDX53Q86TM3 631 aaKnown RBP17.14■□□□□ 0.33
HMGA1-204ENST00000401473 POF1BQ8WVV4 589 aa17.14■□□□□ 0.33
HMGA1-204ENST00000401473 TATDN2Q93075 761 aa17.14■□□□□ 0.33
HMGA1-204ENST00000401473 CHST7Q9NS84 486 aa17.14■□□□□ 0.33
HMGA1-204ENST00000401473 GDAP2Q9NXN4 497 aa17.14■□□□□ 0.33
HMGA1-204ENST00000401473 R3HCC1Q9Y3T6 440 aaKnown RBP17.14■□□□□ 0.33
HMGA1-204ENST00000401473 TIMM13Q9Y5L4 95 aaPredicted RBP17.14■□□□□ 0.33
HMGA1-204ENST00000401473 SNX9Q9Y5X1 595 aa17.14■□□□□ 0.33
HMGA1-204ENST00000401473 CARNS1A5YM72 827 aa17.13■□□□□ 0.33
HMGA1-204ENST00000401473 M0QZQ0 153 aa17.13■□□□□ 0.33
HMGA1-204ENST00000401473 TEX33O43247 280 aa17.13■□□□□ 0.33
HMGA1-204ENST00000401473 STAU1O95793 577 aaKnown RBP17.13■□□□□ 0.33
HMGA1-204ENST00000401473 SLC9A1P19634 815 aa17.13■□□□□ 0.33
HMGA1-204ENST00000401473 ATICP31939 592 aa17.13■□□□□ 0.33
HMGA1-204ENST00000401473 PNPLA4P41247 253 aa17.13■□□□□ 0.33
HMGA1-204ENST00000401473 FANCCQ00597 558 aa17.13■□□□□ 0.33
HMGA1-204ENST00000401473 APBA1Q02410 837 aa17.13■□□□□ 0.33
HMGA1-204ENST00000401473 MYO1EQ12965 1108 aa17.13■□□□□ 0.33
HMGA1-204ENST00000401473 GPM6BQ13491 265 aa17.13■□□□□ 0.33
HMGA1-204ENST00000401473 FAM171A1Q5VUB5 890 aa17.13■□□□□ 0.33
HMGA1-204ENST00000401473 VPS52Q8N1B4 723 aa17.13■□□□□ 0.33
HMGA1-204ENST00000401473 EHBP1Q8NDI1 1231 aa17.13■□□□□ 0.33
HMGA1-204ENST00000401473 C11orf84Q9BUA3 381 aaPredicted RBP17.13■□□□□ 0.33
HMGA1-204ENST00000401473 RTN4Q9NQC3 1192 aaKnown RBP17.13■□□□□ 0.33
HMGA1-204ENST00000401473 NXF1Q9UBU9 619 aaKnown RBP17.13■□□□□ 0.33
HMGA1-204ENST00000401473 SF3B1O75533 1304 aaKnown RBP eCLIP17.12■□□□□ 0.335e-6■■■■■ 33.9
HMGA1-204ENST00000401473 CYB561D2O14569 222 aa17.12■□□□□ 0.33
HMGA1-204ENST00000401473 AP5Z1O43299 807 aa17.12■□□□□ 0.33
HMGA1-204ENST00000401473 N4BP1O75113 896 aaKnown RBP17.12■□□□□ 0.33
HMGA1-204ENST00000401473 TKTP29401 623 aaKnown RBP17.12■□□□□ 0.33
HMGA1-204ENST00000401473 LRMPQ12912 555 aa17.12■□□□□ 0.33
HMGA1-204ENST00000401473 ADGRE1Q14246 886 aa17.12■□□□□ 0.33
HMGA1-204ENST00000401473 PTPN21Q16825 1174 aa17.12■□□□□ 0.33
HMGA1-204ENST00000401473 SOWAHAQ2M3V2 549 aa17.12■□□□□ 0.33
HMGA1-204ENST00000401473 ZNF699Q32M78 642 aa17.12■□□□□ 0.33
HMGA1-204ENST00000401473 SV2CQ496J9 727 aa17.12■□□□□ 0.33
HMGA1-204ENST00000401473 RTP2Q5QGT7 225 aa17.12■□□□□ 0.33
HMGA1-204ENST00000401473 DPY19L2P1Q6NXN4 242 aa17.12■□□□□ 0.33
HMGA1-204ENST00000401473 CEP57Q86XR8 500 aa17.12■□□□□ 0.33
HMGA1-204ENST00000401473 ANKRD20A12PQ8NF67 263 aa17.12■□□□□ 0.33
HMGA1-204ENST00000401473 ZNF560Q96MR9 790 aa17.12■□□□□ 0.33
HMGA1-204ENST00000401473 GUCD1Q96NT3 240 aa17.12■□□□□ 0.33
HMGA1-204ENST00000401473 POLIQ9UNA4 740 aa17.12■□□□□ 0.33
HMGA1-204ENST00000401473 GTPBP10A4D1E9 387 aaKnown RBP17.12■□□□□ 0.33
HMGA1-204ENST00000401473 LGALS16A8MUM7 142 aa17.12■□□□□ 0.33
HMGA1-204ENST00000401473 TRAPPC3O43617 180 aa17.12■□□□□ 0.33
HMGA1-204ENST00000401473 SOD2P04179 222 aa17.12■□□□□ 0.33
HMGA1-204ENST00000401473 FGFR3P22607 806 aa17.12■□□□□ 0.33
HMGA1-204ENST00000401473 PON1P27169 355 aa17.12■□□□□ 0.33
HMGA1-204ENST00000401473 TPM4P67936 248 aa17.12■□□□□ 0.33
HMGA1-204ENST00000401473 NOP14P78316 857 aaKnown RBP17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms