RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 TMEM109Q9BVC6 243 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 UNC93B1Q9H1C4 597 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 WNT8AQ9H1J5 351 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 GRID1Q9ULK0 1009 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 BAG2O95816 211 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 RALAP11233 206 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 PLS3P13797 630 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 ETS1P14921 441 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 CD58P19256 250 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 RASSF2P50749 326 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 RHBDL3P58872 404 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 NOP14P78316 857 aaKnown RBP10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 PLCB3Q01970 1234 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 ICA1Q05084 483 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 SIX1Q15475 284 aaPredicted RBP10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 TNFAIP8L3Q5GJ75 292 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 CCDC125Q86Z20 511 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 LINC00116Q8NCU8 138 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 CPA5Q8WXQ8 436 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 CD209Q9NNX6 404 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 DDX4Q9NQI0 724 aaKnown RBP10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 LRRC42Q9Y546 428 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 K7ENM7 598 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 ATG7O95352 703 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 JUNDP17535 347 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 KCNA3P22001 575 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 ANXA13P27216 316 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 MRPS35P82673 323 aaKnown RBP10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 SPIRE1Q08AE8 756 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 CETN1Q12798 172 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 SPARCL1Q14515 664 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 LRRC36Q1X8D7 754 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 P3H1Q32P28 736 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 CERKLQ49MI3 558 aaPredicted RBP10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 TMEM63BQ5T3F8 832 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 SYCP2LQ5T4T6 812 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 RASIP1Q5U651 963 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 NLRP9Q7RTR0 991 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 RNF135Q8IUD6 432 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 OGFOD1Q8N543 542 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 ACSF2Q96CM8 615 aaPredicted RBP10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 BORCS6Q96GS4 357 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 PRR11Q96HE9 360 aaPredicted RBP10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 SMC6Q96SB8 1091 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 LRMDAQ9H2I8 198 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 SCOCQ9UIL1 159 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 MEIS2O14770 477 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 ITIH2P19823 946 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 MAGEA4P43358 317 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 PTK7Q13308 1070 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 CWF19L1Q69YN2 538 aaKnown RBP10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 LVRNQ6Q4G3 990 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 PTF1AQ7RTS3 328 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 PASD1Q8IV76 773 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 TEX9Q8N6V9 391 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 PLPP7Q8NBV4 271 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 ETNPPLQ8TBG4 499 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 ASAP3Q8TDY4 903 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 SYT11Q9BT88 431 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 PI4K2AQ9BTU6 479 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 VCXQ9H320 206 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 FBXO6Q9NRD1 293 aaPredicted RBP10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 LRRC4BQ9NT99 713 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 ARMCX1Q9P291 453 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 SERPINB13Q9UIV8 391 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 CCDC88AQ3V6T2 1871 aa10.47□□□□□ -0.73
PTCHD4-202ENST00000398738 UNCXA6NJT0 531 aa10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 hCG_1984214I3L0E3 225 aa10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 GYG2O15488 501 aa10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 AHCYL1O43865 530 aa10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 PYGLP06737 847 aa10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 FESP07332 822 aa10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 KRT10P13645 584 aa10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 ETS2P15036 469 aa10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 MARK3P27448 753 aa10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 PSMC4P43686 418 aa10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 FAM182BQ5T319 152 aa10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 C11orf63Q6NUN7 778 aa10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 ZNF713Q8N859 430 aaPredicted RBP10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 GLIS1Q8NBF1 620 aa10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 STMN2Q93045 179 aa10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 FGD4Q96M96 766 aa10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 TMEM117Q9H0C3 514 aa10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 C10orf88Q9H8K7 445 aa10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 NUMBLQ9Y6R0 609 aa10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 ZMYM2Q9UBW7 1377 aa10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 GPR75-ASB3A0A0A6YYF3 556 aa10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 GTPBP10A4D1E9 387 aaKnown RBP10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 KLHL33A6NCF5 533 aa10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 EYA4O95677 639 aa10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 ALAS1P13196 640 aa10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 ATF7P17544 494 aaPredicted RBP10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 SMARCA1P28370 1054 aa10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 RPS6KA3P51812 740 aa10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 SLFN13Q68D06 897 aa10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 DESI1Q6ICB0 168 aa10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 ZNF720Q7Z2F6 126 aa10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 RFWD2Q8NHY2 731 aa10.46□□□□□ -0.73
PTCHD4-202ENST00000398738 ZNF148Q9UQR1 794 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms