RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 MXD4Q14582 209 aaPredicted RBP10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 GPR162Q16538 588 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 RNF219Q5W0B1 726 aaPredicted RBP10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 SETD3Q86TU7 594 aaPredicted RBP10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 ENGASEQ8NFI3 743 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 ACAD9Q9H845 621 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 MBD2Q9UBB5 411 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 DKK3Q9UBP4 350 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 BLOC1S6Q9UL45 172 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 NPHP3-ACAD11A0A0J9YXS1 232 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 DGAT1O75907 488 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 KRT6AP02538 564 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 KRT6BP04259 564 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 KRT6CP48668 564 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 GPSM2P81274 684 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 USP49Q70CQ1 688 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 CYFIP1Q7L576 1253 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 CATSPER3Q86XQ3 398 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 PLD3Q8IV08 490 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 SLC30A5Q8TAD4 765 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 KRT35Q92764 455 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 ZNF512BQ96KM6 892 aaPredicted RBP10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 MMP10P09238 476 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 CDH2P19022 906 aaPredicted RBP10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 TRIP10Q15642 601 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 KDM7AQ6ZMT4 941 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 SZRD1Q7Z422 152 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 REXO1L1PQ8IX06 675 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 PPHLN1Q8NEY8 458 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 ASAP3Q8TDY4 903 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 SCFD1Q8WVM8 642 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 EME1Q96AY2 570 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 NSUN4Q96CB9 384 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 THTPAQ9BU02 230 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 TMEM117Q9H0C3 514 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 UNC45AQ9H3U1 944 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 AIPL1Q9NZN9 384 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 P4HA2O15460 535 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 KRT16P08779 473 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 SNRPAP09012 282 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 COMTP21964 271 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 KLRC1P26715 233 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 WDR93Q6P2C0 686 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 COL23A1Q86Y22 540 aaPredicted RBP10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 B4GALNT2Q8NHY0 566 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 MMTAG2Q9BU76 263 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 PAK5Q9P286 719 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 XPO7Q9UIA9 1087 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 PCDHGB4Q9UN71 923 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 ALG6Q9Y672 507 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 B2RBV5 119 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 LZTS3O60299 673 aaPredicted RBP10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 ADRA2BP18089 450 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 PTK7Q13308 1070 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 KYNUQ16719 465 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 EP400NLQ6ZTU2 488 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 LDHDQ86WU2 507 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 TEKT4Q8WW24 435 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 TSPAN17Q96FV3 270 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 KLHL11Q9NVR0 708 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 SMARCAL1Q9NZC9 954 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 C3orf70A6NLC5 250 aaPredicted RBP10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 DLGAP3O95886 979 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 ENO3P13929 434 aaPredicted RBP10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 MDH1BQ5I0G3 518 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 ATAD3BQ5T9A4 648 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 TTC23LQ6PF05 361 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 BARGINQ6ZT62 677 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 PCYOX1LQ8NBM8 494 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 KIF12Q96FN5 646 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 ATXN7L3BQ96GX2 97 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 QTRT2Q9H974 415 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 MTMR4Q9NYA4 1195 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 PCDHB2Q9Y5E7 798 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 PXDNLA1KZ92 1463 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 EIF3DO15371 548 aaKnown RBP eCLIP10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 FDPSP14324 419 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 PDGFRAP16234 1089 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 SLC9A1P19634 815 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 CTCFP49711 727 aaPredicted RBP10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 RBBP8NLQ8NC74 664 aaPredicted RBP10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 SERPINB12Q96P63 405 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 QKIQ96PU8 341 aaKnown RBP eCLIP10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 CASS4Q9NQ75 786 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 SPATA31A3Q5VYP0 1347 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 IGF2BP3O00425 579 aaKnown RBP eCLIP10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 RASSF9O75901 435 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 MYL3P08590 195 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 C4BPBP20851 252 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 HNRNPH1P31943 449 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 ANTXR2P58335 489 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 TPI1P60174 286 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 SNRPFP62306 86 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 RBBP7Q16576 425 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 PATL1Q86TB9 770 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 ZNF555Q8NEP9 628 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 FRMD8Q9BZ67 464 aaPredicted RBP10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 KDM4CQ9H3R0 1056 aa10.74□□□□□ -0.69
LIMCH1-203ENST00000396595 ZNF197O14709 1029 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 ECE2O60344 883 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms