RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 MASTLQ96GX5 879 aa22.39■■□□□ 1.18
UPF3A-202ENST00000375299 MXRA8Q9BRK3 442 aa22.39■■□□□ 1.18
UPF3A-202ENST00000375299 MYPNQ86TC9 1320 aa22.39■■□□□ 1.17
UPF3A-202ENST00000375299 ENO4A6NNW6 628 aa22.39■■□□□ 1.17
UPF3A-202ENST00000375299 DNALI1O14645 258 aaPredicted RBP22.39■■□□□ 1.17
UPF3A-202ENST00000375299 CA4P22748 312 aa22.39■■□□□ 1.17
UPF3A-202ENST00000375299 PEX3P56589 373 aa22.39■■□□□ 1.17
UPF3A-202ENST00000375299 SLC1A5Q15758 541 aa22.39■■□□□ 1.17
UPF3A-202ENST00000375299 TBC1D10BQ4KMP7 808 aaPredicted RBP22.39■■□□□ 1.17
UPF3A-202ENST00000375299 CCDC125Q86Z20 511 aa22.39■■□□□ 1.17
UPF3A-202ENST00000375299 KATNAL2Q8IYT4 538 aa22.39■■□□□ 1.17
UPF3A-202ENST00000375299 FBXO41Q8TF61 875 aa22.39■■□□□ 1.17
UPF3A-202ENST00000375299 CPA5Q8WXQ8 436 aa22.39■■□□□ 1.17
UPF3A-202ENST00000375299 CYLDQ9NQC7 956 aa22.39■■□□□ 1.17
UPF3A-202ENST00000375299 PKD2L1Q9P0L9 805 aa22.39■■□□□ 1.17
UPF3A-202ENST00000375299 WDR3Q9UNX4 943 aaKnown RBP eCLIP22.39■■□□□ 1.17
UPF3A-202ENST00000375299 DPPA5A6NC42 116 aa22.38■■□□□ 1.17
UPF3A-202ENST00000375299 NPM3O75607 178 aaKnown RBP22.38■■□□□ 1.17
UPF3A-202ENST00000375299 ACADSP16219 412 aa22.38■■□□□ 1.17
UPF3A-202ENST00000375299 PTPN4P29074 926 aa22.38■■□□□ 1.17
UPF3A-202ENST00000375299 PTDSS1P48651 473 aaKnown RBP22.38■■□□□ 1.17
UPF3A-202ENST00000375299 CTCFP49711 727 aaPredicted RBP22.38■■□□□ 1.17
UPF3A-202ENST00000375299 TAS2R40P59535 323 aa22.38■■□□□ 1.17
UPF3A-202ENST00000375299 TAF1BQ53T94 588 aaPredicted RBP22.38■■□□□ 1.17
UPF3A-202ENST00000375299 DENND2DQ9H6A0 471 aaPredicted RBP22.38■■□□□ 1.17
UPF3A-202ENST00000375299 TLE6Q9H808 572 aa22.38■■□□□ 1.17
UPF3A-202ENST00000375299 ZFP69BQ9UJL9 534 aa22.38■■□□□ 1.17
UPF3A-202ENST00000375299 MRPL11Q9Y3B7 192 aaKnown RBP22.38■■□□□ 1.17
UPF3A-202ENST00000375299 H0Y3Z8 333 aa22.38■■□□□ 1.17
UPF3A-202ENST00000375299 FKBP1AP62942 108 aaKnown RBP22.38■■□□□ 1.17
UPF3A-202ENST00000375299 TSNAXIP1Q2TAA8 658 aa22.38■■□□□ 1.17
UPF3A-202ENST00000375299 SLC45A4Q5BKX6 768 aa22.38■■□□□ 1.17
UPF3A-202ENST00000375299 HHATQ5VTY9 493 aa22.38■■□□□ 1.17
UPF3A-202ENST00000375299 OTOAQ7RTW8 1153 aa22.38■■□□□ 1.17
UPF3A-202ENST00000375299 LNPEPQ9UIQ6 1025 aa22.38■■□□□ 1.17
UPF3A-202ENST00000375299 EXOC7Q9UPT5 735 aa22.38■■□□□ 1.17
UPF3A-202ENST00000375299 C2CD2LO14523 706 aa22.37■■□□□ 1.17
UPF3A-202ENST00000375299 LMNAP02545 664 aaKnown RBP22.37■■□□□ 1.17
UPF3A-202ENST00000375299 ENOSF1Q7L5Y1 443 aa22.37■■□□□ 1.17
UPF3A-202ENST00000375299 NLRP9Q7RTR0 991 aa22.37■■□□□ 1.17
UPF3A-202ENST00000375299 SUPT20HQ8NEM7 779 aa22.37■■□□□ 1.17
UPF3A-202ENST00000375299 GADD45GIP1Q8TAE8 222 aaPredicted RBP22.37■■□□□ 1.17
UPF3A-202ENST00000375299 TMC2Q8TDI7 906 aa22.37■■□□□ 1.17
UPF3A-202ENST00000375299 SYNPO2Q9UMS6 1093 aa22.37■■□□□ 1.17
UPF3A-202ENST00000375299 SCN9AQ15858 1988 aa22.37■■□□□ 1.17
UPF3A-202ENST00000375299 TYROBPO43914 113 aa22.36■■□□□ 1.17
UPF3A-202ENST00000375299 NSFP46459 744 aaKnown RBP22.36■■□□□ 1.17
UPF3A-202ENST00000375299 GCNT1Q02742 428 aa22.36■■□□□ 1.17
UPF3A-202ENST00000375299 C2CD6Q53TS8 623 aa22.36■■□□□ 1.17
UPF3A-202ENST00000375299 ZNF677Q86XU0 584 aa22.36■■□□□ 1.17
UPF3A-202ENST00000375299 EXD1Q8NHP7 514 aa22.36■■□□□ 1.17
UPF3A-202ENST00000375299 SH3GL3Q99963 347 aa22.36■■□□□ 1.17
UPF3A-202ENST00000375299 RANBP17Q9H2T7 1088 aaKnown RBP22.36■■□□□ 1.17
UPF3A-202ENST00000375299 GPRC5CQ9NQ84 441 aa22.36■■□□□ 1.17
UPF3A-202ENST00000375299 SAR1AQ9NR31 198 aa22.36■■□□□ 1.17
UPF3A-202ENST00000375299 HNRNPCL1O60812 293 aaKnown RBP22.36■■□□□ 1.17
UPF3A-202ENST00000375299 ENTPD5O75356 428 aa22.36■■□□□ 1.17
UPF3A-202ENST00000375299 ITGB5P18084 799 aa22.36■■□□□ 1.17
UPF3A-202ENST00000375299 CD58P19256 250 aa22.36■■□□□ 1.17
UPF3A-202ENST00000375299 MARK3P27448 753 aa22.36■■□□□ 1.17
UPF3A-202ENST00000375299 ECE1P42892 770 aa22.36■■□□□ 1.17
UPF3A-202ENST00000375299 FASTKD3Q14CZ7 662 aaKnown RBP22.36■■□□□ 1.17
UPF3A-202ENST00000375299 OGFOD1Q8N543 542 aa22.36■■□□□ 1.17
UPF3A-202ENST00000375299 DNAJC9Q8WXX5 260 aa22.36■■□□□ 1.17
UPF3A-202ENST00000375299 SH2D3AQ9BRG2 576 aa22.36■■□□□ 1.17
UPF3A-202ENST00000375299 DCLRE1BQ9H816 532 aa22.36■■□□□ 1.17
UPF3A-202ENST00000375299 LRRD1A4D1F6 860 aa22.35■■□□□ 1.17
UPF3A-202ENST00000375299 PECAM1P16284 738 aaPredicted RBP22.35■■□□□ 1.17
UPF3A-202ENST00000375299 GTF2H1P32780 548 aa22.35■■□□□ 1.17
UPF3A-202ENST00000375299 GJC1P36383 396 aa22.35■■□□□ 1.17
UPF3A-202ENST00000375299 SV2AQ7L0J3 742 aa22.35■■□□□ 1.17
UPF3A-202ENST00000375299 MON1BQ7L1V2 547 aa22.35■■□□□ 1.17
UPF3A-202ENST00000375299 GLIS1Q8NBF1 620 aa22.35■■□□□ 1.17
UPF3A-202ENST00000375299 SPDYE1Q8NFV5 336 aaPredicted RBP22.35■■□□□ 1.17
UPF3A-202ENST00000375299 ZNF398Q8TD17 642 aa22.35■■□□□ 1.17
UPF3A-202ENST00000375299 ZNF75CPQ92670 426 aaPredicted RBP22.35■■□□□ 1.17
UPF3A-202ENST00000375299 TIPINQ9BVW5 301 aa22.35■■□□□ 1.17
UPF3A-202ENST00000375299 VPS37BQ9H9H4 285 aa22.35■■□□□ 1.17
UPF3A-202ENST00000375299 SERPINA10Q9UK55 444 aa22.35■■□□□ 1.17
UPF3A-202ENST00000375299 LIASO43766 372 aa22.35■■□□□ 1.17
UPF3A-202ENST00000375299 ECE2O60344 883 aa22.35■■□□□ 1.17
UPF3A-202ENST00000375299 CYP1A1P04798 512 aaPredicted RBP22.35■■□□□ 1.17
UPF3A-202ENST00000375299 FESP07332 822 aa22.35■■□□□ 1.17
UPF3A-202ENST00000375299 PDHA1P08559 390 aa22.35■■□□□ 1.17
UPF3A-202ENST00000375299 QARSP47897 775 aaKnown RBP22.35■■□□□ 1.17
UPF3A-202ENST00000375299 LBRQ14739 615 aaKnown RBP22.35■■□□□ 1.17
UPF3A-202ENST00000375299 CCDC142Q17RM4 750 aa22.35■■□□□ 1.17
UPF3A-202ENST00000375299 FYB2Q5VWT5 728 aa22.35■■□□□ 1.17
UPF3A-202ENST00000375299 LVRNQ6Q4G3 990 aa22.35■■□□□ 1.17
UPF3A-202ENST00000375299 APLFQ8IW19 511 aaPredicted RBP22.35■■□□□ 1.17
UPF3A-202ENST00000375299 MFSD14AQ96MC6 490 aa22.35■■□□□ 1.17
UPF3A-202ENST00000375299 PI4K2AQ9BTU6 479 aa22.35■■□□□ 1.17
UPF3A-202ENST00000375299 FHDC1Q9C0D6 1143 aaPredicted RBP22.35■■□□□ 1.17
UPF3A-202ENST00000375299 PPCSQ9HAB8 311 aa22.35■■□□□ 1.17
UPF3A-202ENST00000375299 SLC24A2Q9UI40 661 aa22.35■■□□□ 1.17
UPF3A-202ENST00000375299 TBX20Q9UMR3 447 aa22.35■■□□□ 1.17
UPF3A-202ENST00000375299 AHCYL1O43865 530 aa22.34■■□□□ 1.17
UPF3A-202ENST00000375299 FGFR1P11362 822 aa22.34■■□□□ 1.17
UPF3A-202ENST00000375299 CNGA1P29973 690 aa22.34■■□□□ 1.17
UPF3A-202ENST00000375299 HP1BP3Q5SSJ5 553 aaPredicted RBP22.34■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms