RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 ARHGEF26Q96DR7 871 aa16.79■□□□□ 0.28
COL18A1-203ENST00000359759 MANSC1Q9H8J5 431 aa16.79■□□□□ 0.28
COL18A1-203ENST00000359759 ZNF335Q9H4Z2 1342 aaPredicted RBP16.78■□□□□ 0.28
COL18A1-203ENST00000359759 DDX5P17844 614 aaKnown RBP16.78■□□□□ 0.28
COL18A1-203ENST00000359759 KCNK10P57789 538 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 KRT76Q01546 638 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 DUOXA2Q1HG44 320 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 POTEAQ6S8J7 498 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 SH3TC2Q8TF17 1288 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 PABPC5Q96DU9 382 aaKnown RBP16.78■□□□□ 0.28
COL18A1-203ENST00000359759 SENP7Q9BQF6 1050 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 INSRP06213 1382 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 C21orf2O43822 256 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 TOMM70O94826 608 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 SLC1A1P43005 524 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 CHSY1Q86X52 802 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 MUC3BQ9H195 1237 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 RNF146Q9NTX7 359 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 HERC5Q9UII4 1024 aaKnown RBP16.78■□□□□ 0.28
COL18A1-203ENST00000359759 SOX13Q9UN79 622 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 EPB42P16452 691 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 NUDT2P50583 147 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 NCALDP61601 193 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 FAM20AQ96MK3 541 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 ZIM3Q96PE6 472 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 WRNIP1Q96S55 665 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 BSDC1Q9NW68 430 aaPredicted RBP16.78■□□□□ 0.28
COL18A1-203ENST00000359759 CHORDC1Q9UHD1 332 aaPredicted RBP16.78■□□□□ 0.28
COL18A1-203ENST00000359759 KLHL2O95198 593 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 PDGFRBP09619 1106 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 NME5P56597 212 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 DSG1Q02413 1049 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 OVGP1Q12889 678 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 MEI1Q5TIA1 1274 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 FRMD5Q7Z6J6 570 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 GLMNQ92990 594 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 ACSF2Q96CM8 615 aaPredicted RBP16.78■□□□□ 0.28
COL18A1-203ENST00000359759 DMAP1Q9NPF5 467 aaPredicted RBP16.78■□□□□ 0.28
COL18A1-203ENST00000359759 PNMA3Q9UL41 463 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 POLRMTO00411 1230 aaKnown RBP16.78■□□□□ 0.28
COL18A1-203ENST00000359759 RAD51Q06609 339 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 GRM4Q14833 912 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 SYDE1Q6ZW31 735 aaPredicted RBP16.78■□□□□ 0.28
COL18A1-203ENST00000359759 NSUN6Q8TEA1 469 aaKnown RBP16.78■□□□□ 0.28
COL18A1-203ENST00000359759 TUBGCP3Q96CW5 907 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 AGPAT5Q9NUQ2 364 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 BARHL2Q9NY43 387 aa16.78■□□□□ 0.28
COL18A1-203ENST00000359759 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.77■□□□□ 0.28
COL18A1-203ENST00000359759 EEF2KO00418 725 aaKnown RBP16.77■□□□□ 0.28
COL18A1-203ENST00000359759 FAM107AO95990 144 aa16.77■□□□□ 0.28
COL18A1-203ENST00000359759 YWHABP31946 246 aaKnown RBP16.77■□□□□ 0.28
COL18A1-203ENST00000359759 MROH9Q5TGP6 573 aa16.77■□□□□ 0.28
COL18A1-203ENST00000359759 RCSD1Q6JBY9 416 aa16.77■□□□□ 0.28
COL18A1-203ENST00000359759 TSPAN17Q96FV3 270 aa16.77■□□□□ 0.28
COL18A1-203ENST00000359759 RGL1Q9NZL6 768 aa16.77■□□□□ 0.28
COL18A1-203ENST00000359759 MTO1Q9Y2Z2 717 aaKnown RBP16.77■□□□□ 0.28
COL18A1-203ENST00000359759 ABCC2Q92887 1545 aa16.77■□□□□ 0.28
COL18A1-203ENST00000359759 GUCY1A2P33402 732 aa16.77■□□□□ 0.28
COL18A1-203ENST00000359759 ANKRD49Q8WVL7 239 aa16.77■□□□□ 0.28
COL18A1-203ENST00000359759 ALBP02768 609 aa16.77■□□□□ 0.28
COL18A1-203ENST00000359759 CYP2C19P33261 490 aa16.77■□□□□ 0.28
COL18A1-203ENST00000359759 KYNUQ16719 465 aa16.77■□□□□ 0.28
COL18A1-203ENST00000359759 SLC44A4Q53GD3 710 aa16.77■□□□□ 0.28
COL18A1-203ENST00000359759 C1orf131Q8NDD1 294 aaKnown RBP16.77■□□□□ 0.28
COL18A1-203ENST00000359759 NSL1Q96IY1 281 aa16.77■□□□□ 0.28
COL18A1-203ENST00000359759 FOPNLQ96NB1 174 aa16.77■□□□□ 0.28
COL18A1-203ENST00000359759 MZF1P28698 734 aaPredicted RBP16.77■□□□□ 0.27
COL18A1-203ENST00000359759 SERPINB5P36952 375 aa16.77■□□□□ 0.27
COL18A1-203ENST00000359759 ALFQ53S48 1182 aa16.77■□□□□ 0.27
COL18A1-203ENST00000359759 WLSQ5T9L3 541 aa16.77■□□□□ 0.27
COL18A1-203ENST00000359759 IPMKQ8NFU5 416 aa16.77■□□□□ 0.27
COL18A1-203ENST00000359759 C18orf8Q96DM3 657 aa16.77■□□□□ 0.27
COL18A1-203ENST00000359759 GTF2A1LQ9UNN4 478 aa16.77■□□□□ 0.27
COL18A1-203ENST00000359759 SESN1Q9Y6P5 492 aa16.77■□□□□ 0.27
COL18A1-203ENST00000359759 RSPH10B2B2RC85 870 aa16.77■□□□□ 0.27
COL18A1-203ENST00000359759 ASNSP08243 561 aa16.77■□□□□ 0.27
COL18A1-203ENST00000359759 RSPH10BP0C881 870 aa16.77■□□□□ 0.27
COL18A1-203ENST00000359759 ITGA8P53708 1063 aa16.77■□□□□ 0.27
COL18A1-203ENST00000359759 GALCP54803 685 aa16.77■□□□□ 0.27
COL18A1-203ENST00000359759 TTLL4Q14679 1199 aa16.77■□□□□ 0.27
COL18A1-203ENST00000359759 BBS7Q8IWZ6 715 aa16.77■□□□□ 0.27
COL18A1-203ENST00000359759 RALBP11234 206 aa16.76■□□□□ 0.27
COL18A1-203ENST00000359759 ENOSF1Q7L5Y1 443 aa16.76■□□□□ 0.27
COL18A1-203ENST00000359759 RNF149Q8NC42 400 aa16.76■□□□□ 0.27
COL18A1-203ENST00000359759 TCOF1Q13428 1488 aaKnown RBP16.76■□□□□ 0.27
COL18A1-203ENST00000359759 NPM3O75607 178 aaKnown RBP16.76■□□□□ 0.27
COL18A1-203ENST00000359759 FMR1Q06787 632 aaKnown RBP eCLIP16.76■□□□□ 0.279e-7■■■□□ 18.8
COL18A1-203ENST00000359759 HLFQ16534 295 aa16.76■□□□□ 0.27
COL18A1-203ENST00000359759 HAUS6Q7Z4H7 955 aa16.76■□□□□ 0.27
COL18A1-203ENST00000359759 KLHL25Q9H0H3 589 aa16.76■□□□□ 0.27
COL18A1-203ENST00000359759 PRG3Q9Y2Y8 225 aaPredicted RBP16.76■□□□□ 0.27
COL18A1-203ENST00000359759 SFNP31947 248 aa16.76■□□□□ 0.27
COL18A1-203ENST00000359759 WDR72Q3MJ13 1102 aa16.76■□□□□ 0.27
COL18A1-203ENST00000359759 TBC1D19Q8N5T2 526 aa16.76■□□□□ 0.27
COL18A1-203ENST00000359759 FAM49BQ9NUQ9 324 aa16.76■□□□□ 0.27
COL18A1-203ENST00000359759 HOXC10Q9NYD6 342 aa16.76■□□□□ 0.27
COL18A1-203ENST00000359759 TFR2Q9UP52 801 aa16.76■□□□□ 0.27
COL18A1-203ENST00000359759 ITIH2P19823 946 aa16.76■□□□□ 0.27
COL18A1-203ENST00000359759 RCN1Q15293 331 aa16.76■□□□□ 0.27
COL18A1-203ENST00000359759 MRPS26Q9BYN8 205 aaKnown RBP16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms