RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 MTMR12Q9C0I1 747 aa9.81□□□□□ -0.84
UPF2-202ENST00000357604 SCINQ9Y6U3 715 aa9.81□□□□□ -0.84
UPF2-202ENST00000357604 MYH6P13533 1939 aa9.8□□□□□ -0.84
UPF2-202ENST00000357604 CSDE1O75534 798 aaKnown RBP9.8□□□□□ -0.84
UPF2-202ENST00000357604 ZNF189O75820 626 aaPredicted RBP9.8□□□□□ -0.84
UPF2-202ENST00000357604 NOP14P78316 857 aaKnown RBP9.8□□□□□ -0.84
UPF2-202ENST00000357604 DDX53Q86TM3 631 aaKnown RBP9.8□□□□□ -0.84
UPF2-202ENST00000357604 UNC93AQ86WB7 457 aa9.8□□□□□ -0.84
UPF2-202ENST00000357604 GPT2Q8TD30 523 aa9.8□□□□□ -0.84
UPF2-202ENST00000357604 PIK3R5Q8WYR1 880 aa9.8□□□□□ -0.84
UPF2-202ENST00000357604 TRPC7Q9HCX4 862 aa9.8□□□□□ -0.84
UPF2-202ENST00000357604 FAM207AQ9NSI2 230 aaPredicted RBP9.8□□□□□ -0.84
UPF2-202ENST00000357604 SH3BP1Q9Y3L3 701 aa9.8□□□□□ -0.84
UPF2-202ENST00000357604 MOCS3O95396 460 aa9.8□□□□□ -0.84
UPF2-202ENST00000357604 SFSWAPQ12872 951 aaKnown RBP9.8□□□□□ -0.84
UPF2-202ENST00000357604 STK4Q13043 487 aa9.8□□□□□ -0.84
UPF2-202ENST00000357604 TPGS2Q68CL5 300 aa9.8□□□□□ -0.84
UPF2-202ENST00000357604 RRAGAQ7L523 313 aa9.8□□□□□ -0.84
UPF2-202ENST00000357604 CDR2LQ86X02 465 aaPredicted RBP9.8□□□□□ -0.84
UPF2-202ENST00000357604 POP1Q99575 1024 aaKnown RBP9.8□□□□□ -0.84
UPF2-202ENST00000357604 NSUN3Q9H649 340 aaKnown RBP9.8□□□□□ -0.84
UPF2-202ENST00000357604 CYP4F11Q9HBI6 524 aa9.8□□□□□ -0.84
UPF2-202ENST00000357604 OLA1Q9NTK5 396 aaKnown RBP9.8□□□□□ -0.84
UPF2-202ENST00000357604 TRPM5Q9NZQ8 1165 aa9.8□□□□□ -0.84
UPF2-202ENST00000357604 APOEP02649 317 aa9.8□□□□□ -0.84
UPF2-202ENST00000357604 GNA15P30679 374 aa9.8□□□□□ -0.84
UPF2-202ENST00000357604 SSTR3P32745 418 aaPredicted RBP9.8□□□□□ -0.84
UPF2-202ENST00000357604 ZNF445P59923 1031 aa9.8□□□□□ -0.84
UPF2-202ENST00000357604 TAP1Q03518 808 aa9.8□□□□□ -0.84
UPF2-202ENST00000357604 ECM1Q16610 540 aa9.8□□□□□ -0.84
UPF2-202ENST00000357604 TMEM270Q6UE05 265 aa9.8□□□□□ -0.84
UPF2-202ENST00000357604 VPS52Q8N1B4 723 aa9.8□□□□□ -0.84
UPF2-202ENST00000357604 FBXO44Q9H4M3 255 aa9.8□□□□□ -0.84
UPF2-202ENST00000357604 MRPL47Q9HD33 250 aaKnown RBP9.8□□□□□ -0.84
UPF2-202ENST00000357604 DNAJC12Q9UKB3 198 aa9.8□□□□□ -0.84
UPF2-202ENST00000357604 STAP1Q9ULZ2 295 aa9.8□□□□□ -0.84
UPF2-202ENST00000357604 MAGED2Q9UNF1 606 aaPredicted RBP9.8□□□□□ -0.84
UPF2-202ENST00000357604 STK10O94804 968 aaKnown RBP9.8□□□□□ -0.84
UPF2-202ENST00000357604 ATAT1Q5SQI0 421 aa9.8□□□□□ -0.84
UPF2-202ENST00000357604 USP49Q70CQ1 688 aa9.8□□□□□ -0.84
UPF2-202ENST00000357604 RTL10Q7L3V2 364 aa9.8□□□□□ -0.84
UPF2-202ENST00000357604 SYCE1Q8N0S2 351 aa9.8□□□□□ -0.84
UPF2-202ENST00000357604 FAXDC2Q96IV6 333 aa9.8□□□□□ -0.84
UPF2-202ENST00000357604 CNTN3Q9P232 1028 aa9.8□□□□□ -0.84
UPF2-202ENST00000357604 TBX21Q9UL17 535 aa9.8□□□□□ -0.84
UPF2-202ENST00000357604 B4GALT5O43286 388 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 KIF5CO60282 957 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 FGFR1P11362 822 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 CDC25CP30307 473 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 OR6B2Q6IFH4 312 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 FUT10Q6P4F1 479 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 KCNT2Q6UVM3 1135 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 KCNK18Q7Z418 384 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 MRPL10Q7Z7H8 261 aaKnown RBP9.79□□□□□ -0.84
UPF2-202ENST00000357604 PLCD3Q8N3E9 789 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 SMARCD1Q96GM5 515 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 SYT15Q9BQS2 421 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 NXF3Q9H4D5 531 aaKnown RBP9.79□□□□□ -0.84
UPF2-202ENST00000357604 COMMD8Q9NX08 183 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 DDX43Q9NXZ2 648 aaKnown RBP9.79□□□□□ -0.84
UPF2-202ENST00000357604 ZNF646O15015 1829 aaPredicted RBP9.79□□□□□ -0.84
UPF2-202ENST00000357604 VDRP11473 427 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 KRT10P13645 584 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 LLGL2Q6P1M3 1020 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 ERICH1Q86X53 443 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 XPNPEP1Q9NQW7 623 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 ASAH2Q9NR71 780 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 ZNF623O75123 536 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 CASP1P29466 404 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 BMPR1AP36894 532 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 PPP3CCP48454 512 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 SNW1Q13573 536 aaKnown RBP9.79□□□□□ -0.84
UPF2-202ENST00000357604 COL9A3Q14050 684 aaPredicted RBP9.79□□□□□ -0.84
UPF2-202ENST00000357604 SPECC1LQ69YQ0 1117 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 TRAPPC11Q7Z392 1133 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 BSNDQ8WZ55 320 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 FANCLQ9NW38 375 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 ABI2Q9NYB9 513 aaPredicted RBP9.79□□□□□ -0.84
UPF2-202ENST00000357604 LZTS1Q9Y250 596 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 ANKRD63C9JTQ0 380 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 NFKBIAP25963 317 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 CUL2Q13617 745 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 DPCR1Q3MIW9 517 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 C9orf57Q5W0N0 161 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 SMYD5Q6GMV2 418 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 C18orf25Q96B23 403 aaPredicted RBP9.79□□□□□ -0.84
UPF2-202ENST00000357604 DNAJC19Q96DA6 116 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 CBWD1Q9BRT8 395 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 EDEM3Q9BZQ6 932 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 FAM204AQ9H8W3 233 aa9.79□□□□□ -0.84
UPF2-202ENST00000357604 TRIM49BA6NDI0 452 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 LGALS16A8MUM7 142 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 MGAT3Q09327 533 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 LMBRD2Q68DH5 695 aaPredicted RBP9.78□□□□□ -0.84
UPF2-202ENST00000357604 LUZP1Q86V48 1076 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 CBWD2Q8IUF1 395 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 TMTC1Q8IUR5 882 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 BBS5Q8N3I7 341 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 ZNF557Q8N988 423 aaPredicted RBP9.78□□□□□ -0.84
UPF2-202ENST00000357604 CSGALNACT1Q8TDX6 532 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms