RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 AMHP03971 560 aa9.88□□□□□ -0.83
USP4-202ENST00000351842 ALDH7A1P49419 539 aaKnown RBP9.88□□□□□ -0.83
USP4-202ENST00000351842 DSC3Q14574 896 aa9.88□□□□□ -0.83
USP4-202ENST00000351842 FAM26DQ5JW98 314 aa9.88□□□□□ -0.83
USP4-202ENST00000351842 RPAINQ86UA6 219 aa9.88□□□□□ -0.83
USP4-202ENST00000351842 C12orf29Q8N999 325 aa9.88□□□□□ -0.83
USP4-202ENST00000351842 IPO4Q8TEX9 1081 aaKnown RBP9.88□□□□□ -0.83
USP4-202ENST00000351842 VWCEQ96DN2 955 aa9.88□□□□□ -0.83
USP4-202ENST00000351842 IL23AQ9NPF7 189 aa9.88□□□□□ -0.83
USP4-202ENST00000351842 SPTLC3Q9NUV7 552 aa9.88□□□□□ -0.83
USP4-202ENST00000351842 UBQLN1Q9UMX0 589 aaKnown RBP9.88□□□□□ -0.83
USP4-202ENST00000351842 SOWAHDA6NJG2 315 aa9.88□□□□□ -0.83
USP4-202ENST00000351842 IL18RAPO95256 599 aa9.88□□□□□ -0.83
USP4-202ENST00000351842 PBX2P40425 430 aa9.88□□□□□ -0.83
USP4-202ENST00000351842 CYP27A1Q02318 531 aa9.88□□□□□ -0.83
USP4-202ENST00000351842 WSCD1Q658N2 575 aa9.88□□□□□ -0.83
USP4-202ENST00000351842 KIAA1841Q6NSI8 718 aa9.88□□□□□ -0.83
USP4-202ENST00000351842 CHRDL2Q6WN34 429 aa9.88□□□□□ -0.83
USP4-202ENST00000351842 EHBP1Q8NDI1 1231 aa9.88□□□□□ -0.83
USP4-202ENST00000351842 MRFAP1L1Q96HT8 127 aa9.88□□□□□ -0.83
USP4-202ENST00000351842 ALG13Q9NP73 1137 aaKnown RBP9.88□□□□□ -0.83
USP4-202ENST00000351842 APEX2Q9UBZ4 518 aa9.88□□□□□ -0.83
USP4-202ENST00000351842 SIK3Q9Y2K2 1263 aa9.88□□□□□ -0.83
USP4-202ENST00000351842 AKR1B15C9JRZ8 316 aaPredicted RBP9.87□□□□□ -0.83
USP4-202ENST00000351842 ATP2C2O75185 946 aa9.87□□□□□ -0.83
USP4-202ENST00000351842 RBP5P82980 135 aa9.87□□□□□ -0.83
USP4-202ENST00000351842 MYO1EQ12965 1108 aa9.87□□□□□ -0.83
USP4-202ENST00000351842 PPIGQ13427 754 aaKnown RBP eCLIP9.87□□□□□ -0.835e-7■■■□□ 17.5
USP4-202ENST00000351842 TMEM240Q5SV17 173 aa9.87□□□□□ -0.83
USP4-202ENST00000351842 KLHDC7AQ5VTJ3 777 aa9.87□□□□□ -0.83
USP4-202ENST00000351842 FAM171A1Q5VUB5 890 aa9.87□□□□□ -0.83
USP4-202ENST00000351842 C9orf57Q5W0N0 161 aa9.87□□□□□ -0.83
USP4-202ENST00000351842 SARM1Q6SZW1 724 aa9.87□□□□□ -0.83
USP4-202ENST00000351842 UBE2Q1Q7Z7E8 422 aa9.87□□□□□ -0.83
USP4-202ENST00000351842 ACOT1Q86TX2 421 aa9.87□□□□□ -0.83
USP4-202ENST00000351842 ZNF397Q8NF99 534 aaPredicted RBP9.87□□□□□ -0.83
USP4-202ENST00000351842 TMC2Q8TDI7 906 aa9.87□□□□□ -0.83
USP4-202ENST00000351842 ASB7Q9H672 318 aa9.87□□□□□ -0.83
USP4-202ENST00000351842 TMEM161AQ9NX61 479 aa9.87□□□□□ -0.83
USP4-202ENST00000351842 NOL4O94818 638 aa9.87□□□□□ -0.83
USP4-202ENST00000351842 SPATA31D3P0C874 917 aa9.87□□□□□ -0.83
USP4-202ENST00000351842 RAB27AP51159 221 aa9.87□□□□□ -0.83
USP4-202ENST00000351842 SPATA31D4Q6ZUB0 917 aa9.87□□□□□ -0.83
USP4-202ENST00000351842 SLC47A2Q86VL8 602 aa9.87□□□□□ -0.83
USP4-202ENST00000351842 KREMEN1Q96MU8 473 aa9.87□□□□□ -0.83
USP4-202ENST00000351842 MRPL45Q9BRJ2 306 aaKnown RBP9.87□□□□□ -0.83
USP4-202ENST00000351842 ST7Q9NRC1 585 aa9.87□□□□□ -0.83
USP4-202ENST00000351842 PCDHGC5Q9Y5F6 944 aa9.87□□□□□ -0.83
USP4-202ENST00000351842 LRRC10BA6NIK2 292 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 A8MXQ7 604 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 CYB561D2O14569 222 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 RPLP2P05387 115 aaKnown RBP9.86□□□□□ -0.83
USP4-202ENST00000351842 LMO2P25791 158 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 MSNP26038 577 aaKnown RBP9.86□□□□□ -0.83
USP4-202ENST00000351842 DNA2P51530 1060 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 SNRPFP62306 86 aaKnown RBP9.86□□□□□ -0.83
USP4-202ENST00000351842 HEXIM2Q96MH2 286 aaKnown RBP9.86□□□□□ -0.83
USP4-202ENST00000351842 NRDE2Q9H7Z3 1164 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 ZNHIT6Q9NWK9 470 aaKnown RBP9.86□□□□□ -0.83
USP4-202ENST00000351842 FAN1Q9Y2M0 1017 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 GIT1Q9Y2X7 761 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.86□□□□□ -0.833e-7■■□□□ 13.3
USP4-202ENST00000351842 KPNA7A9QM74 516 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 AKR1B10O60218 316 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 HUS1O60921 280 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 CAND2O75155 1236 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 ABCB4P21439 1286 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 BRD2P25440 801 aaKnown RBP9.86□□□□□ -0.83
USP4-202ENST00000351842 ADORA2BP29275 332 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 LILRA4P59901 499 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 KLHL30Q0D2K2 578 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 TIGD5Q53EQ6 642 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 NPAS4Q8IUM7 802 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 SLC20A1Q8WUM9 679 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 DPEP3Q9H4B8 488 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 CISHQ9NSE2 258 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 ADAMTS1Q9UHI8 967 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 SIP14410 1827 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 NRP1O14786 923 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 KIAA0391O15091 583 aaKnown RBP9.86□□□□□ -0.83
USP4-202ENST00000351842 STX10O60499 249 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 ALDH2P05091 517 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 CA3P07451 260 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 SLC11A1P49279 550 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 TAF6P49848 677 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 MYBPC2Q14324 1141 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 PRSS55Q6UWB4 352 aaPredicted RBP9.86□□□□□ -0.83
USP4-202ENST00000351842 ZNF598Q86UK7 904 aaKnown RBP9.86□□□□□ -0.83
USP4-202ENST00000351842 ZC3H3Q8IXZ2 948 aaKnown RBP9.86□□□□□ -0.83
USP4-202ENST00000351842 SENP8Q96LD8 212 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 TWNKQ96RR1 684 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 RHOBTB2Q9BYZ6 727 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 CNTN3Q9P232 1028 aa9.86□□□□□ -0.83
USP4-202ENST00000351842 RFXAPO00287 272 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 THAP12O43422 761 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 XPOTO43592 962 aaKnown RBP9.85□□□□□ -0.83
USP4-202ENST00000351842 N4BP1O75113 896 aaKnown RBP9.85□□□□□ -0.83
USP4-202ENST00000351842 MARSP56192 900 aaKnown RBP9.85□□□□□ -0.83
USP4-202ENST00000351842 CUL2Q13617 745 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 SURF1Q15526 300 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms