RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 POU5F2Q8N7G0 328 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 RIN3Q8TB24 985 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 SNX19Q92543 992 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 OLFML3Q9NRN5 406 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 PSMC3IPQ9P2W1 217 aaPredicted RBP9.11□□□□□ -0.95
RTN3-202ENST00000339997 APPL1Q9UKG1 709 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 ITIH6Q6UXX5 1313 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 ATP10DQ9P241 1426 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 hCG_1984214I3L0E3 225 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 DAB1O75553 588 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 MMP10P09238 476 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 NUDT2P50583 147 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 KPNA2P52292 529 aaKnown RBP9.11□□□□□ -0.95
RTN3-202ENST00000339997 AP3B2Q13367 1082 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 BMPR2Q13873 1038 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 TBCCQ15814 346 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 SGO1Q5FBB7 561 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 TWF2Q6IBS0 349 aaKnown RBP9.11□□□□□ -0.95
RTN3-202ENST00000339997 KDM7AQ6ZMT4 941 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 ZNF713Q8N859 430 aaPredicted RBP9.11□□□□□ -0.95
RTN3-202ENST00000339997 APOL2Q9BQE5 337 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 ALDH8A1Q9H2A2 487 aaPredicted RBP9.11□□□□□ -0.95
RTN3-202ENST00000339997 PAPOLBQ9NRJ5 636 aaKnown RBP9.11□□□□□ -0.95
RTN3-202ENST00000339997 RNF146Q9NTX7 359 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 PARVAQ9NVD7 372 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 PDS5AQ29RF7 1337 aaKnown RBP9.11□□□□□ -0.95
RTN3-202ENST00000339997 COILP38432 576 aaPredicted RBP9.11□□□□□ -0.95
RTN3-202ENST00000339997 USP10Q14694 798 aaKnown RBP9.11□□□□□ -0.95
RTN3-202ENST00000339997 ALX1Q15699 326 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 ARL13BQ3SXY8 428 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 SLFN12LQ6IEE8 588 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 WDR93Q6P2C0 686 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 ARMCX2Q7L311 632 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 ZNF786Q8N393 782 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 TTC8Q8TAM2 541 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 C7orf25Q9BPX7 421 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 DCUN1D5Q9BTE7 237 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 CDC42EP4Q9H3Q1 356 aaKnown RBP9.11□□□□□ -0.95
RTN3-202ENST00000339997 VCPKMTQ9H867 229 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 CASS4Q9NQ75 786 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 MID2Q9UJV3 735 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 PNMA8BQ9ULN7 279 aaPredicted RBP9.11□□□□□ -0.95
RTN3-202ENST00000339997 SNX9Q9Y5X1 595 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 TMEM94Q12767 1356 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 TET3O43151 1660 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 CLTCQ00610 1675 aaKnown RBP9.11□□□□□ -0.95
RTN3-202ENST00000339997 MYO1GB0I1T2 1018 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 ERVV-1B6SEH8 477 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 PDE2AO00408 941 aaPredicted RBP9.11□□□□□ -0.95
RTN3-202ENST00000339997 NFIBO00712 420 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 TSPAN3O60637 253 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 MYL2P10916 166 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 YWHABP31946 246 aaKnown RBP9.11□□□□□ -0.95
RTN3-202ENST00000339997 GPC3P51654 580 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 MAPK7Q13164 816 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 DMC1Q14565 340 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 DCAF4L1Q3SXM0 396 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 RCSD1Q6JBY9 416 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 NSL1Q96IY1 281 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 C10orf88Q9H8K7 445 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 KIF17Q9P2E2 1029 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 KIF13AQ9H1H9 1805 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 SMIM22K7EJ46 135 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 AP1G2O75843 785 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 SGPL1O95470 568 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 KLRK1P26718 216 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 KIZQ2M2Z5 673 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 FUT11Q495W5 492 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 C11orf63Q6NUN7 778 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 AADACL2Q6P093 401 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 NEDD1Q8NHV4 660 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 SLC20A1Q8WUM9 679 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 DHX38Q92620 1227 aaKnown RBP9.1□□□□□ -0.95
RTN3-202ENST00000339997 E2F7Q96AV8 911 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 TMEM121Q9BTD3 319 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 EIF2AQ9BY44 585 aaKnown RBP9.1□□□□□ -0.95
RTN3-202ENST00000339997 SEMA6BQ9H3T3 888 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 MOSPD1Q9UJG1 213 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 ANKRD26Q9UPS8 1709 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 CPSF1Q10570 1443 aaKnown RBP9.1□□□□□ -0.95
RTN3-202ENST00000339997 PEX1O43933 1283 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 MRPS35P82673 323 aaKnown RBP9.1□□□□□ -0.95
RTN3-202ENST00000339997 LRRC74AQ0VAA2 488 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 AMHR2Q16671 573 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 TJAP1Q5JTD0 557 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 AGBL2Q5U5Z8 902 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 LRIG3Q6UXM1 1119 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 IZUMO2Q6UXV1 221 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 RBBP8NLQ8NC74 664 aaPredicted RBP9.1□□□□□ -0.95
RTN3-202ENST00000339997 MCPH1Q8NEM0 835 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 KAT2BQ92831 832 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 SLC5A5Q92911 643 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 ADGRA2Q96PE1 1338 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 CCDC159P0C7I6 412 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 IL10P22301 178 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 EPHB2P29323 1055 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 AVPR1AP37288 418 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 VHLP40337 213 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 NEK2P51955 445 aa9.1□□□□□ -0.95
RTN3-202ENST00000339997 CSE1LP55060 971 aaKnown RBP9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms