RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 RNMTO43148 476 aaKnown RBP13.41□□□□□ -0.26
USP47-202ENST00000339865 TFRCP02786 760 aaKnown RBP13.41□□□□□ -0.26
USP47-202ENST00000339865 ACADSP16219 412 aa13.41□□□□□ -0.26
USP47-202ENST00000339865 SRP54P61011 504 aaKnown RBP13.41□□□□□ -0.26
USP47-202ENST00000339865 YWHAZP63104 245 aaKnown RBP13.41□□□□□ -0.26
USP47-202ENST00000339865 NFX1Q12986 1120 aaKnown RBP13.41□□□□□ -0.26
USP47-202ENST00000339865 NOD2Q9HC29 1040 aa13.41□□□□□ -0.26
USP47-202ENST00000339865 KLHL1Q9NR64 748 aa13.41□□□□□ -0.26
USP47-202ENST00000339865 ADD3Q9UEY8 706 aaKnown RBP13.41□□□□□ -0.26
USP47-202ENST00000339865 TRIM49BA6NDI0 452 aa13.41□□□□□ -0.26
USP47-202ENST00000339865 TRIM49D1C9J1S8 452 aa13.41□□□□□ -0.26
USP47-202ENST00000339865 TTLL1O95922 423 aa13.41□□□□□ -0.26
USP47-202ENST00000339865 NAA30Q147X3 362 aaPredicted RBP13.41□□□□□ -0.26
USP47-202ENST00000339865 KYNUQ16719 465 aa13.41□□□□□ -0.26
USP47-202ENST00000339865 ASPRV1Q53RT3 343 aa13.41□□□□□ -0.26
USP47-202ENST00000339865 FAM102AQ5T9C2 384 aaPredicted RBP13.41□□□□□ -0.26
USP47-202ENST00000339865 DCAF5Q96JK2 942 aa13.41□□□□□ -0.26
USP47-202ENST00000339865 VAV3Q9UKW4 847 aa13.41□□□□□ -0.26
USP47-202ENST00000339865 RAB23Q9ULC3 237 aa13.41□□□□□ -0.26
USP47-202ENST00000339865 FGD5Q6ZNL6 1462 aa13.41□□□□□ -0.26
USP47-202ENST00000339865 ALDH1B1P30837 517 aa13.41□□□□□ -0.26
USP47-202ENST00000339865 SPANXN2Q5MJ10 180 aa13.41□□□□□ -0.26
USP47-202ENST00000339865 VPS37AQ8NEZ2 397 aa13.41□□□□□ -0.26
USP47-202ENST00000339865 PAGE5Q96GU1 130 aa13.41□□□□□ -0.26
USP47-202ENST00000339865 DENND3A2RUS2 1198 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 SKAP2O75563 359 aaPredicted RBP13.4□□□□□ -0.26
USP47-202ENST00000339865 MED26O95402 600 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 TAB1Q15750 504 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 MRPL48Q96GC5 212 aaKnown RBP13.4□□□□□ -0.26
USP47-202ENST00000339865 RIMS2Q9UQ26 1411 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 ZNF185O15231 689 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 KRT20P35900 424 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 C3orf62Q6ZUJ4 267 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 ZNF614Q8N883 585 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 PIF1Q9H611 641 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 SLC16A2P36021 539 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 MAGEA10P43363 369 aaPredicted RBP13.4□□□□□ -0.26
USP47-202ENST00000339865 GTF2H3Q13889 308 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 OASLQ15646 514 aaKnown RBP13.4□□□□□ -0.26
USP47-202ENST00000339865 CYFIP1Q7L576 1253 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.4□□□□□ -0.26
USP47-202ENST00000339865 GRID2IPA4D2P6 1211 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 MOCS2O96007 188 aaPredicted RBP13.4□□□□□ -0.26
USP47-202ENST00000339865 SERPINB5P36952 375 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 GCLMP48507 274 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 KCNQ4P56696 695 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 NRG3P56975 720 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 CCNA1P78396 465 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 ABATP80404 500 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 CACNB2Q08289 660 aaPredicted RBP13.4□□□□□ -0.26
USP47-202ENST00000339865 EIF2B5Q13144 721 aaKnown RBP13.4□□□□□ -0.26
USP47-202ENST00000339865 USP10Q14694 798 aaKnown RBP13.4□□□□□ -0.26
USP47-202ENST00000339865 CYP51A1Q16850 503 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 CHKBQ9Y259 395 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 SDC4P31431 198 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 CHI3L1P36222 383 aaPredicted RBP13.4□□□□□ -0.26
USP47-202ENST00000339865 KCTD2Q14681 263 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 EFHC2Q5JST6 749 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 MTHFD1LQ6UB35 978 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 CATSPER2Q96P56 530 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 KLHL11Q9NVR0 708 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 BABAM1Q9NWV8 329 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 RGS12O14924 1447 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 ABCC4O15439 1325 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 LCA5LO95447 670 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 CCNE1P24864 410 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 GCKRQ14397 625 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 TOMM20Q15388 145 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 TAF2Q6P1X5 1199 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 ZCCHC7Q8N3Z6 543 aaKnown RBP13.4□□□□□ -0.26
USP47-202ENST00000339865 L3MBTL3Q96JM7 780 aaPredicted RBP13.4□□□□□ -0.26
USP47-202ENST00000339865 SLC9A7Q96T83 725 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 C11orf70Q9BRQ4 267 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 ZNF304Q9HCX3 659 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 RPRD1BQ9NQG5 326 aaKnown RBP13.4□□□□□ -0.26
USP47-202ENST00000339865 CEP72Q9P209 647 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 TJP2Q9UDY2 1190 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 PALD1Q9ULE6 856 aa13.4□□□□□ -0.26
USP47-202ENST00000339865 HUS1O60921 280 aa13.39□□□□□ -0.27
USP47-202ENST00000339865 WARSP23381 471 aaKnown RBP13.39□□□□□ -0.27
USP47-202ENST00000339865 GYG1P46976 350 aa13.39□□□□□ -0.27
USP47-202ENST00000339865 ZNF200P98182 395 aaPredicted RBP13.39□□□□□ -0.27
USP47-202ENST00000339865 DHX34Q14147 1143 aaKnown RBP13.39□□□□□ -0.27
USP47-202ENST00000339865 SCARA3Q6AZY7 606 aa13.39□□□□□ -0.27
USP47-202ENST00000339865 COA7Q96BR5 231 aa13.39□□□□□ -0.27
USP47-202ENST00000339865 CTNNAL1Q9UBT7 734 aa13.39□□□□□ -0.27
USP47-202ENST00000339865 CCT8L1PA6NM43 557 aa13.39□□□□□ -0.27
USP47-202ENST00000339865 GPATCH4Q5T3I0 446 aaKnown RBP13.39□□□□□ -0.27
USP47-202ENST00000339865 IL31Q6EBC2 164 aa13.39□□□□□ -0.27
USP47-202ENST00000339865 TMEM79Q9BSE2 394 aa13.39□□□□□ -0.27
USP47-202ENST00000339865 QTRT2Q9H974 415 aaKnown RBP13.39□□□□□ -0.27
USP47-202ENST00000339865 RAB6BQ9NRW1 208 aa13.39□□□□□ -0.27
USP47-202ENST00000339865 ARHGEF38Q9NXL2 777 aa13.39□□□□□ -0.27
USP47-202ENST00000339865 KLHL3Q9UH77 587 aa13.39□□□□□ -0.27
USP47-202ENST00000339865 CDY2AQ9Y6F7 541 aa13.39□□□□□ -0.27
USP47-202ENST00000339865 CDY1Q9Y6F8 540 aa13.39□□□□□ -0.27
USP47-202ENST00000339865 P4HA2O15460 535 aa13.39□□□□□ -0.27
USP47-202ENST00000339865 COPAP53621 1224 aa13.39□□□□□ -0.27
USP47-202ENST00000339865 RHAGQ02094 409 aa13.39□□□□□ -0.27
USP47-202ENST00000339865 BYSLQ13895 437 aaKnown RBP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms