RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 DIXDC1Q155Q3 683 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 TJAP1Q5JTD0 557 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 ZFP1Q6P2D0 407 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 ZSCAN18Q8TBC5 510 aaPredicted RBP3.45□□□□□ -1.86
CSMD3-202ENST00000339701 FMO2Q99518 471 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 MTG1Q9BT17 334 aaPredicted RBP3.45□□□□□ -1.86
CSMD3-202ENST00000339701 NRBP1Q9UHY1 535 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 CDC23Q9UJX2 597 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 DNM3Q9UQ16 869 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 URB1O60287 2271 aaKnown RBP3.45□□□□□ -1.86
CSMD3-202ENST00000339701 MYBL1P10243 752 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 ERCC2P18074 760 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 DCKP27707 260 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 CRKP46108 304 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 NPTX2P47972 431 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 POLA2Q14181 598 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 CEP78Q5JTW2 689 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 TRMT10CQ7L0Y3 403 aaKnown RBP3.45□□□□□ -1.86
CSMD3-202ENST00000339701 BBS7Q8IWZ6 715 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 GJD3Q8N144 294 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 SNF8Q96H20 258 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 ASB2Q96Q27 587 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 MAP3K14Q99558 947 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 C1orf112Q9NSG2 853 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 ZBTB40Q9NUA8 1239 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 INTS9Q9NV88 658 aaKnown RBP3.45□□□□□ -1.86
CSMD3-202ENST00000339701 KANSL3Q9P2N6 904 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 ZNF263O14978 683 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 EIF3HO15372 352 aaKnown RBP eCLIP3.45□□□□□ -1.86
CSMD3-202ENST00000339701 S100A9P06702 114 aaKnown RBP3.45□□□□□ -1.86
CSMD3-202ENST00000339701 KRT7P08729 469 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 TBXAS1P24557 533 aaPredicted RBP3.45□□□□□ -1.86
CSMD3-202ENST00000339701 SOX6P35712 828 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 ASIC1P78348 528 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 KLC1Q07866 573 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 TIGD5Q53EQ6 642 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 CATSPER4Q7RTX7 472 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 MIGA1Q8NAN2 632 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 ZNF784Q8NCA9 323 aaPredicted RBP3.45□□□□□ -1.86
CSMD3-202ENST00000339701 RSAD2Q8WXG1 361 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 TP53INP1Q96A56 240 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 ZNF512BQ96KM6 892 aaPredicted RBP3.45□□□□□ -1.86
CSMD3-202ENST00000339701 SPATA33Q96N06 139 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 RILPQ96NA2 401 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 MRPL9Q9BYD2 267 aaKnown RBP3.45□□□□□ -1.86
CSMD3-202ENST00000339701 DEFB129Q9H1M3 183 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 RAD21L1Q9H4I0 556 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 ARMT1Q9H993 441 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 TRMT1Q9NXH9 659 aaKnown RBP3.45□□□□□ -1.86
CSMD3-202ENST00000339701 WDR35Q9P2L0 1181 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 AK5Q9Y6K8 562 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 UBE2Q2LH0YL09 131 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 CNTFP26441 200 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 GUCY2FP51841 1108 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 ACTN3Q08043 901 aaPredicted RBP3.45□□□□□ -1.86
CSMD3-202ENST00000339701 SPP2Q13103 211 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 SPARCL1Q14515 664 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 P3H1Q32P28 736 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 TCHHL1Q5QJ38 904 aaPredicted RBP3.45□□□□□ -1.86
CSMD3-202ENST00000339701 C20orf194Q5TEA3 1177 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 TMEM179Q6ZVK1 233 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 EEPD1Q7L9B9 569 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 ANKRD13CQ8N6S4 541 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 KLHL29Q96CT2 875 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 VCPIP1Q96JH7 1222 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 SLC4A9Q96Q91 983 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 RNF26Q9BY78 433 aaPredicted RBP3.45□□□□□ -1.86
CSMD3-202ENST00000339701 TLE6Q9H808 572 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 AMACRQ9UHK6 382 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 PALD1Q9ULE6 856 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 CLCA2Q9UQC9 943 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 ALG6Q9Y672 507 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 XIRP1Q702N8 1843 aaKnown RBP3.45□□□□□ -1.86
CSMD3-202ENST00000339701 SYNRGQ9UMZ2 1314 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 RBM47A0AV96 593 aaKnown RBP3.45□□□□□ -1.86
CSMD3-202ENST00000339701 CAPN8A6NHC0 703 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 DLL1O00548 723 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 ECEL1O95672 775 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 PNMA6AP0CW24 399 aaPredicted RBP3.45□□□□□ -1.86
CSMD3-202ENST00000339701 BMP3P12645 472 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 AKR1A1P14550 325 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 ABCB4P21439 1286 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 NLRP11P59045 1033 aaKnown RBP3.45□□□□□ -1.86
CSMD3-202ENST00000339701 EIF5AP63241 154 aaKnown RBP3.45□□□□□ -1.86
CSMD3-202ENST00000339701 LRRC32Q14392 662 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 SNAP47Q5SQN1 464 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 C6orf10Q5SRN2 563 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 DDI2Q5TDH0 399 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 ITPRIPL1Q6GPH6 555 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 CENPPQ6IPU0 288 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 ZNF579Q8NAF0 562 aaKnown RBP3.45□□□□□ -1.86
CSMD3-202ENST00000339701 PPWD1Q96BP3 646 aaKnown RBP3.45□□□□□ -1.86
CSMD3-202ENST00000339701 B3GALT6Q96L58 329 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 NLRP4Q96MN2 994 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 NUDCD1Q96RS6 583 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 FKBP14Q9NWM8 211 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 ZNFX1Q9P2E3 1918 aaKnown RBP3.45□□□□□ -1.86
CSMD3-202ENST00000339701 COL24A1Q17RW2 1714 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 MYMKA6NI61 221 aa3.45□□□□□ -1.86
CSMD3-202ENST00000339701 CXCL11O14625 94 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms