RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 MAD2L2Q9UI95 211 aa5.94□□□□□ -1.46
CSDE1-202ENST00000339438 HEY1Q9Y5J3 304 aa5.94□□□□□ -1.46
CSDE1-202ENST00000339438 NUP210Q8TEM1 1887 aaPredicted RBP5.94□□□□□ -1.46
CSDE1-202ENST00000339438 MYH9P35579 1960 aaKnown RBP5.94□□□□□ -1.46
CSDE1-202ENST00000339438 hCG_1642624A0A1W2PR95 340 aa5.94□□□□□ -1.46
CSDE1-202ENST00000339438 ANKRD63C9JTQ0 380 aa5.94□□□□□ -1.46
CSDE1-202ENST00000339438 KRIT1O00522 736 aa5.94□□□□□ -1.46
CSDE1-202ENST00000339438 WDR46O15213 610 aaKnown RBP5.94□□□□□ -1.46
CSDE1-202ENST00000339438 CEP104O60308 925 aa5.94□□□□□ -1.46
CSDE1-202ENST00000339438 SUPT3HO75486 399 aa5.94□□□□□ -1.46
CSDE1-202ENST00000339438 MUTP22033 750 aa5.94□□□□□ -1.46
CSDE1-202ENST00000339438 COPB2P35606 906 aa5.94□□□□□ -1.46
CSDE1-202ENST00000339438 RPL21P46778 160 aaKnown RBP5.94□□□□□ -1.46
CSDE1-202ENST00000339438 HDAC4P56524 1084 aa5.94□□□□□ -1.46
CSDE1-202ENST00000339438 TROAPQ12815 778 aa5.94□□□□□ -1.46
CSDE1-202ENST00000339438 RPS6KA1Q15418 735 aa5.94□□□□□ -1.46
CSDE1-202ENST00000339438 Q6ZNX1 250 aa5.94□□□□□ -1.46
CSDE1-202ENST00000339438 TREML1Q86YW5 311 aa5.94□□□□□ -1.46
CSDE1-202ENST00000339438 ALDH16A1Q8IZ83 802 aa5.94□□□□□ -1.46
CSDE1-202ENST00000339438 ZNF276Q8N554 614 aa5.94□□□□□ -1.46
CSDE1-202ENST00000339438 FANCBQ8NB91 859 aa5.94□□□□□ -1.46
CSDE1-202ENST00000339438 GLG1Q92896 1179 aa5.94□□□□□ -1.46
CSDE1-202ENST00000339438 FAM81BQ96LP2 452 aa5.94□□□□□ -1.46
CSDE1-202ENST00000339438 TGS1Q96RS0 853 aaKnown RBP5.94□□□□□ -1.46
CSDE1-202ENST00000339438 NACAP1Q9BZK3 213 aa5.94□□□□□ -1.46
CSDE1-202ENST00000339438 MLXIPLQ9NP71 852 aa5.94□□□□□ -1.46
CSDE1-202ENST00000339438 NYAP2Q9P242 653 aa5.94□□□□□ -1.46
CSDE1-202ENST00000339438 ZNF212Q9UDV6 495 aa5.94□□□□□ -1.46
CSDE1-202ENST00000339438 SLC12A7Q9Y666 1083 aa5.94□□□□□ -1.46
CSDE1-202ENST00000339438 TTC3P53804 2025 aa5.94□□□□□ -1.46
CSDE1-202ENST00000339438 hCG_2014768A0A024R1R8 64 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 CAPN9O14815 690 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 PSMA7O14818 248 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 GSC2O15499 205 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 CELF2O95319 508 aaKnown RBP5.93□□□□□ -1.46
CSDE1-202ENST00000339438 MARK3P27448 753 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 SLCO1A2P46721 670 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 ADAM17P78536 824 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 CREB5Q02930 508 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 MSLNQ13421 630 aaPredicted RBP5.93□□□□□ -1.46
CSDE1-202ENST00000339438 EAPPQ56P03 285 aaPredicted RBP5.93□□□□□ -1.46
CSDE1-202ENST00000339438 KLHL35Q6PF15 583 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 SLC44A5Q8NCS7 719 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 NEDD1Q8NHV4 660 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 SPOCK2Q92563 424 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 HPS3Q969F9 1004 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 DYNLL2Q96FJ2 89 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 MPP4Q96JB8 637 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 PPP1R12CQ9BZL4 782 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 GANQ9H2C0 597 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 CUEDC2Q9H467 287 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 PTPN22Q9Y2R2 807 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 DAAM1Q9Y4D1 1078 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 ADGRA3Q8IWK6 1321 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 COL27A1Q8IZC6 1860 aaPredicted RBP5.93□□□□□ -1.46
CSDE1-202ENST00000339438 PFDN1O60925 122 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 BMP15O95972 392 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 HSPA1AP0DMV8 641 aaKnown RBP5.93□□□□□ -1.46
CSDE1-202ENST00000339438 HSPA1BP0DMV9 641 aaKnown RBP5.93□□□□□ -1.46
CSDE1-202ENST00000339438 FGFR4P22455 802 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 KRT2P35908 639 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 LONP1P36776 959 aaKnown RBP5.93□□□□□ -1.46
CSDE1-202ENST00000339438 FAM83BQ5T0W9 1011 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 ARL6IP4Q66PJ3 421 aaKnown RBP5.93□□□□□ -1.46
CSDE1-202ENST00000339438 DENND2CQ68D51 928 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 TMEM53Q6P2H8 277 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 TTC27Q6P3X3 843 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 ERO1BQ86YB8 467 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 ANKRD13AQ8IZ07 590 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 ZBED8Q8IZ13 594 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 ART4Q93070 314 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 ZNF653Q96CK0 615 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 MBOAT7Q96N66 472 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 TRIM9Q9C026 710 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 MIS12Q9H081 205 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 TBCCD1Q9NVR7 557 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 IL1RAPL1Q9NZN1 696 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 CEP72Q9P209 647 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 TIMM22Q9Y584 194 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 BAZ2BQ9UIF8 2168 aaKnown RBP5.93□□□□□ -1.46
CSDE1-202ENST00000339438 TDRD15B5MCY1 1934 aaKnown RBP5.93□□□□□ -1.46
CSDE1-202ENST00000339438 HGSO14964 777 aaPredicted RBP5.93□□□□□ -1.46
CSDE1-202ENST00000339438 TCEA3O75764 348 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 TFAP2AP05549 437 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 PDGFRBP09619 1106 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 XRCC5P13010 732 aaKnown RBP5.93□□□□□ -1.46
CSDE1-202ENST00000339438 AKR1B1P15121 316 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 ECE1P42892 770 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 BACE1P56817 501 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 POLR2FP61218 127 aaKnown RBP5.93□□□□□ -1.46
CSDE1-202ENST00000339438 MAN2A1Q16706 1144 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 RTN1Q16799 776 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 DEFB115Q30KQ5 88 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 SMUG1Q53HV7 270 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 PHLDB3Q6NSJ2 640 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 KLC3Q6P597 504 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 CEP128Q6ZU80 1094 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 ZNF571Q7Z3V5 609 aaPredicted RBP5.93□□□□□ -1.46
CSDE1-202ENST00000339438 KLHDC9Q8NEP7 349 aa5.93□□□□□ -1.46
CSDE1-202ENST00000339438 DEPTORQ8TB45 409 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms