RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 CDR2Q01850 454 aa15.98■□□□□ 0.15
CCDC88C-202ENST00000334448 GFPT1Q06210 699 aaPredicted RBP15.98■□□□□ 0.15
CCDC88C-202ENST00000334448 INCA1Q0VD86 236 aa15.98■□□□□ 0.15
CCDC88C-202ENST00000334448 MYO1EQ12965 1108 aa15.98■□□□□ 0.15
CCDC88C-202ENST00000334448 PDCD11Q14690 1871 aaKnown RBP15.98■□□□□ 0.15
CCDC88C-202ENST00000334448 TRIM60Q495X7 471 aa15.98■□□□□ 0.15
CCDC88C-202ENST00000334448 NOP9Q86U38 636 aaKnown RBP15.98■□□□□ 0.15
CCDC88C-202ENST00000334448 LNX1Q8TBB1 728 aaPredicted RBP15.98■□□□□ 0.15
CCDC88C-202ENST00000334448 DIS3LQ8TF46 1054 aaKnown RBP15.98■□□□□ 0.15
CCDC88C-202ENST00000334448 C18orf25Q96B23 403 aaPredicted RBP15.98■□□□□ 0.15
CCDC88C-202ENST00000334448 ZNF560Q96MR9 790 aa15.98■□□□□ 0.15
CCDC88C-202ENST00000334448 AGPAT1Q99943 283 aa15.98■□□□□ 0.15
CCDC88C-202ENST00000334448 TANC1Q9C0D5 1861 aa15.98■□□□□ 0.15
CCDC88C-202ENST00000334448 C11orf49Q9H6J7 331 aa15.98■□□□□ 0.15
CCDC88C-202ENST00000334448 ELAC1Q9H777 363 aaKnown RBP15.98■□□□□ 0.15
CCDC88C-202ENST00000334448 CISHQ9NSE2 258 aa15.98■□□□□ 0.15
CCDC88C-202ENST00000334448 GDAP2Q9NXN4 497 aa15.98■□□□□ 0.15
CCDC88C-202ENST00000334448 MYO1AQ9UBC5 1043 aa15.98■□□□□ 0.15
CCDC88C-202ENST00000334448 ADAMTS1Q9UHI8 967 aa15.98■□□□□ 0.15
CCDC88C-202ENST00000334448 R3HCC1Q9Y3T6 440 aaKnown RBP15.98■□□□□ 0.15
CCDC88C-202ENST00000334448 PCDHA13Q9Y5I0 950 aa15.98■□□□□ 0.15
CCDC88C-202ENST00000334448 DNAH12Q6ZR08 3092 aa15.98■□□□□ 0.15
CCDC88C-202ENST00000334448 BRCA2P51587 3418 aa15.97■□□□□ 0.15
CCDC88C-202ENST00000334448 ARL5CA6NH57 179 aa15.97■□□□□ 0.15
CCDC88C-202ENST00000334448 OFD1O75665 1012 aa15.97■□□□□ 0.15
CCDC88C-202ENST00000334448 KRT19P08727 400 aa15.97■□□□□ 0.15
CCDC88C-202ENST00000334448 FAM163BP0C2L3 166 aa15.97■□□□□ 0.15
CCDC88C-202ENST00000334448 GZMAP12544 262 aa15.97■□□□□ 0.15
CCDC88C-202ENST00000334448 CHRNB2P17787 502 aa15.97■□□□□ 0.15
CCDC88C-202ENST00000334448 PAX3P23760 479 aa15.97■□□□□ 0.15
CCDC88C-202ENST00000334448 GUCY2FP51841 1108 aa15.97■□□□□ 0.15
CCDC88C-202ENST00000334448 CYP27A1Q02318 531 aa15.97■□□□□ 0.15
CCDC88C-202ENST00000334448 PTPN14Q15678 1187 aa15.97■□□□□ 0.15
CCDC88C-202ENST00000334448 WDR72Q3MJ13 1102 aa15.97■□□□□ 0.15
CCDC88C-202ENST00000334448 GLRA4Q5JXX5 417 aa15.97■□□□□ 0.15
CCDC88C-202ENST00000334448 ALKBH5Q6P6C2 394 aaKnown RBP15.97■□□□□ 0.15
CCDC88C-202ENST00000334448 RTN4RL1Q86UN2 441 aaPredicted RBP15.97■□□□□ 0.15
CCDC88C-202ENST00000334448 SLC47A2Q86VL8 602 aa15.97■□□□□ 0.15
CCDC88C-202ENST00000334448 RBBP8NLQ8NC74 664 aaPredicted RBP15.97■□□□□ 0.15
CCDC88C-202ENST00000334448 SEPT8Q92599 483 aa15.97■□□□□ 0.15
CCDC88C-202ENST00000334448 HIPK3Q9H422 1215 aa15.97■□□□□ 0.15
CCDC88C-202ENST00000334448 RSAD1Q9HA92 442 aa15.97■□□□□ 0.15
CCDC88C-202ENST00000334448 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.97■□□□□ 0.15
CCDC88C-202ENST00000334448 KLK14Q9P0G3 267 aa15.97■□□□□ 0.15
CCDC88C-202ENST00000334448 MEIS3P2A8K0S8 358 aa15.96■□□□□ 0.15
CCDC88C-202ENST00000334448 TULP1O00294 542 aaPredicted RBP15.96■□□□□ 0.15
CCDC88C-202ENST00000334448 PAEPP09466 180 aa15.96■□□□□ 0.15
CCDC88C-202ENST00000334448 KRT5P13647 590 aa15.96■□□□□ 0.15
CCDC88C-202ENST00000334448 RFC2P35250 354 aa15.96■□□□□ 0.15
CCDC88C-202ENST00000334448 MLH1P40692 756 aa15.96■□□□□ 0.15
CCDC88C-202ENST00000334448 MAGEA1P43355 309 aa15.96■□□□□ 0.15
CCDC88C-202ENST00000334448 ATN1P54259 1190 aaPredicted RBP15.96■□□□□ 0.15
CCDC88C-202ENST00000334448 ETF1P62495 437 aaKnown RBP15.96■□□□□ 0.15
CCDC88C-202ENST00000334448 FMO1Q01740 532 aa15.96■□□□□ 0.15
CCDC88C-202ENST00000334448 SOX4Q06945 474 aaPredicted RBP15.96■□□□□ 0.15
CCDC88C-202ENST00000334448 GRIK3Q13003 919 aa15.96■□□□□ 0.15
CCDC88C-202ENST00000334448 ARHGAP29Q52LW3 1261 aa15.96■□□□□ 0.15
CCDC88C-202ENST00000334448 UBE2Q1Q7Z7E8 422 aa15.96■□□□□ 0.15
CCDC88C-202ENST00000334448 GPIHBP1Q8IV16 184 aa15.96■□□□□ 0.15
CCDC88C-202ENST00000334448 GLYCTKQ8IVS8 523 aa15.96■□□□□ 0.15
CCDC88C-202ENST00000334448 SLC20A1Q8WUM9 679 aa15.96■□□□□ 0.15
CCDC88C-202ENST00000334448 ELMO3Q96BJ8 720 aa15.96■□□□□ 0.15
CCDC88C-202ENST00000334448 ZFP42Q96MM3 310 aa15.96■□□□□ 0.15
CCDC88C-202ENST00000334448 RPS6KC1Q96S38 1066 aa15.96■□□□□ 0.15
CCDC88C-202ENST00000334448 GAD1Q99259 594 aa15.96■□□□□ 0.15
CCDC88C-202ENST00000334448 WNT8AQ9H1J5 351 aa15.96■□□□□ 0.15
CCDC88C-202ENST00000334448 TMEM161AQ9NX61 479 aa15.96■□□□□ 0.15
CCDC88C-202ENST00000334448 PCDHB4Q9Y5E5 795 aa15.96■□□□□ 0.15
CCDC88C-202ENST00000334448 RCCD1A6NED2 376 aa15.95■□□□□ 0.14
CCDC88C-202ENST00000334448 PPEF2O14830 753 aa15.95■□□□□ 0.14
CCDC88C-202ENST00000334448 KRT86O43790 486 aa15.95■□□□□ 0.14
CCDC88C-202ENST00000334448 CILPO75339 1184 aa15.95■□□□□ 0.14
CCDC88C-202ENST00000334448 THP07101 528 aa15.95■□□□□ 0.14
CCDC88C-202ENST00000334448 TNFAIP3P21580 790 aa15.95■□□□□ 0.14
CCDC88C-202ENST00000334448 RPL9P32969 192 aaKnown RBP15.95■□□□□ 0.14
CCDC88C-202ENST00000334448 USP8P40818 1118 aa15.95■□□□□ 0.14
CCDC88C-202ENST00000334448 TNNC1P63316 161 aa15.95■□□□□ 0.14
CCDC88C-202ENST00000334448 KIF5AQ12840 1032 aa15.95■□□□□ 0.14
CCDC88C-202ENST00000334448 SV2CQ496J9 727 aa15.95■□□□□ 0.14
CCDC88C-202ENST00000334448 PPP1R2P3Q6NXS1 205 aa15.95■□□□□ 0.14
CCDC88C-202ENST00000334448 TMEM270Q6UE05 265 aa15.95■□□□□ 0.14
CCDC88C-202ENST00000334448 TRIM72Q6ZMU5 477 aa15.95■□□□□ 0.14
CCDC88C-202ENST00000334448 NECAB2Q7Z6G3 386 aa15.95■□□□□ 0.14
CCDC88C-202ENST00000334448 KIAA1328Q86T90 577 aa15.95■□□□□ 0.14
CCDC88C-202ENST00000334448 C16orf45Q96MC5 204 aaPredicted RBP15.95■□□□□ 0.14
CCDC88C-202ENST00000334448 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.95■□□□□ 0.14
CCDC88C-202ENST00000334448 TMEM106CQ9BVX2 250 aa15.95■□□□□ 0.14
CCDC88C-202ENST00000334448 LACRTQ9GZZ8 138 aa15.95■□□□□ 0.14
CCDC88C-202ENST00000334448 ISCUQ9H1K1 167 aa15.95■□□□□ 0.14
CCDC88C-202ENST00000334448 POLIQ9UNA4 740 aa15.95■□□□□ 0.14
CCDC88C-202ENST00000334448 A0A0A6YYK5 440 aaPredicted RBP15.94■□□□□ 0.14
CCDC88C-202ENST00000334448 A0A0U1RQJ8 604 aa15.94■□□□□ 0.14
CCDC88C-202ENST00000334448 TACC1O75410 805 aa15.94■□□□□ 0.14
CCDC88C-202ENST00000334448 CLTBP09497 229 aa15.94■□□□□ 0.14
CCDC88C-202ENST00000334448 AARSP49588 968 aaKnown RBP eCLIP15.94■□□□□ 0.14
CCDC88C-202ENST00000334448 TAF6P49848 677 aa15.94■□□□□ 0.14
CCDC88C-202ENST00000334448 TCEAL1Q15170 157 aa15.94■□□□□ 0.14
CCDC88C-202ENST00000334448 CCDC122Q5T0U0 273 aa15.94■□□□□ 0.14
CCDC88C-202ENST00000334448 DPH6Q7L8W6 267 aa15.94■□□□□ 0.14
CCDC88C-202ENST00000334448 RPUSD2Q8IZ73 545 aaKnown RBP15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms