RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 RXFP1Q9HBX9 757 aa17.14■□□□□ 0.33
CCDC28A-201ENST00000332797 PCDHB8Q9UN66 801 aa17.14■□□□□ 0.33
CCDC28A-201ENST00000332797 PRUNE2Q8WUY3 3088 aa17.14■□□□□ 0.33
CCDC28A-201ENST00000332797 M0QZQ0 153 aa17.13■□□□□ 0.33
CCDC28A-201ENST00000332797 SLC16A3O15427 465 aaKnown RBP17.13■□□□□ 0.33
CCDC28A-201ENST00000332797 ADH1AP07327 375 aa17.13■□□□□ 0.33
CCDC28A-201ENST00000332797 ODC1P11926 461 aa17.13■□□□□ 0.33
CCDC28A-201ENST00000332797 PAX3P23760 479 aa17.13■□□□□ 0.33
CCDC28A-201ENST00000332797 NDUFV1P49821 464 aa17.13■□□□□ 0.33
CCDC28A-201ENST00000332797 VAMP7P51809 220 aa17.13■□□□□ 0.33
CCDC28A-201ENST00000332797 NLRP12P59046 1061 aa17.13■□□□□ 0.33
CCDC28A-201ENST00000332797 BFSP1Q12934 665 aa17.13■□□□□ 0.33
CCDC28A-201ENST00000332797 ADAM15Q13444 863 aa17.13■□□□□ 0.33
CCDC28A-201ENST00000332797 BIRC3Q13489 604 aa17.13■□□□□ 0.33
CCDC28A-201ENST00000332797 COL19A1Q14993 1142 aa17.13■□□□□ 0.33
CCDC28A-201ENST00000332797 VARS2Q5ST30 1063 aaKnown RBP17.13■□□□□ 0.33
CCDC28A-201ENST00000332797 TTI2Q6NXR4 508 aa17.13■□□□□ 0.33
CCDC28A-201ENST00000332797 ANKS3Q6ZW76 656 aa17.13■□□□□ 0.33
CCDC28A-201ENST00000332797 USP37Q86T82 979 aa17.13■□□□□ 0.33
CCDC28A-201ENST00000332797 LRRC52Q8N7C0 313 aa17.13■□□□□ 0.33
CCDC28A-201ENST00000332797 MLKLQ8NB16 471 aa17.13■□□□□ 0.33
CCDC28A-201ENST00000332797 APPL2Q8NEU8 664 aa17.13■□□□□ 0.33
CCDC28A-201ENST00000332797 VN1R2Q8NFZ6 395 aa17.13■□□□□ 0.33
CCDC28A-201ENST00000332797 CXorf38Q8TB03 319 aa17.13■□□□□ 0.33
CCDC28A-201ENST00000332797 SENP8Q96LD8 212 aa17.13■□□□□ 0.33
CCDC28A-201ENST00000332797 DUSP9Q99956 384 aaKnown RBP17.13■□□□□ 0.33
CCDC28A-201ENST00000332797 FNIP2Q9P278 1114 aa17.13■□□□□ 0.33
CCDC28A-201ENST00000332797 TIMM13Q9Y5L4 95 aaPredicted RBP17.13■□□□□ 0.33
CCDC28A-201ENST00000332797 PHACTR2O75167 634 aa17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 GLP2RO95838 553 aa17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 TRIM49P0CI25 452 aa17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 TRIM49CP0CI26 452 aa17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 AP3M2P53677 418 aa17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 CLDN10P78369 228 aa17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 CTC1Q2NKJ3 1217 aa17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 DPCR1Q3MIW9 517 aa17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 RBM43Q6ZSC3 357 aaKnown RBP17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 THEGQ9P2T0 379 aa17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 MTRRQ9UBK8 725 aa17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 BARX2Q9UMQ3 279 aaPredicted RBP17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 COG5Q9UP83 839 aa17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 HCFC2Q9Y5Z7 792 aa17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 SCN1AP35498 2009 aa17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 KPNA7A9QM74 516 aa17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 CYB561D2O14569 222 aa17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 TBX10O75333 385 aa17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 SRGAP2BP0DMP2 458 aa17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 KCNA5P22460 613 aa17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 CLCN4P51793 760 aa17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 DLX2Q07687 328 aaPredicted RBP17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 MYO1EQ12965 1108 aa17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 TRPC3Q13507 836 aa17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 TDRD10Q5VZ19 366 aaKnown RBP17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 ZNF280DQ6N043 979 aa17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 FOXR2Q6PJQ5 311 aa17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 PPFIBP1Q86W92 1011 aa17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 CEP63Q96MT8 703 aa17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 CLSTN3Q9BQT9 956 aa17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 TMEM63CQ9P1W3 806 aa17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 RWDD2AQ9UIY3 292 aa17.12■□□□□ 0.33
CCDC28A-201ENST00000332797 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.11■□□□□ 0.33
CCDC28A-201ENST00000332797 ARHGEF37A1IGU5 675 aa17.11■□□□□ 0.33
CCDC28A-201ENST00000332797 H3BQ06 376 aaPredicted RBP17.11■□□□□ 0.33
CCDC28A-201ENST00000332797 H7C4K7 107 aa17.11■□□□□ 0.33
CCDC28A-201ENST00000332797 CLSTN1O94985 981 aa17.11■□□□□ 0.33
CCDC28A-201ENST00000332797 EPCAMP16422 314 aa17.11■□□□□ 0.33
CCDC28A-201ENST00000332797 PTMSP20962 102 aa17.11■□□□□ 0.33
CCDC28A-201ENST00000332797 LTBRP36941 435 aa17.11■□□□□ 0.33
CCDC28A-201ENST00000332797 TFF2Q03403 129 aa17.11■□□□□ 0.33
CCDC28A-201ENST00000332797 YWHAHQ04917 246 aaPredicted RBP17.11■□□□□ 0.33
CCDC28A-201ENST00000332797 KCNC3Q14003 757 aa17.11■□□□□ 0.33
CCDC28A-201ENST00000332797 CTXN3Q4LDR2 81 aa17.11■□□□□ 0.33
CCDC28A-201ENST00000332797 C1orf220Q5T0J3 134 aa17.11■□□□□ 0.33
CCDC28A-201ENST00000332797 CAVIN1Q6NZI2 390 aaKnown RBP17.11■□□□□ 0.33
CCDC28A-201ENST00000332797 RSPO2Q6UXX9 243 aaPredicted RBP17.11■□□□□ 0.33
CCDC28A-201ENST00000332797 PALB2Q86YC2 1186 aa17.11■□□□□ 0.33
CCDC28A-201ENST00000332797 SLC22A17Q8WUG5 538 aa17.11■□□□□ 0.33
CCDC28A-201ENST00000332797 CASP10Q92851 521 aa17.11■□□□□ 0.33
CCDC28A-201ENST00000332797 BORCS6Q96GS4 357 aa17.11■□□□□ 0.33
CCDC28A-201ENST00000332797 HPDLQ96IR7 371 aa17.11■□□□□ 0.33
CCDC28A-201ENST00000332797 MMRN2Q9H8L6 949 aa17.11■□□□□ 0.33
CCDC28A-201ENST00000332797 DACH1Q9UI36 760 aa17.11■□□□□ 0.33
CCDC28A-201ENST00000332797 BACE2Q9Y5Z0 518 aa17.11■□□□□ 0.33
CCDC28A-201ENST00000332797 CDY1Q9Y6F8 540 aa17.11■□□□□ 0.33
CCDC28A-201ENST00000332797 SPTBN5Q9NRC6 3674 aaKnown RBP17.11■□□□□ 0.33
CCDC28A-201ENST00000332797 TSC2P49815 1807 aa17.1■□□□□ 0.33
CCDC28A-201ENST00000332797 PLXNA3P51805 1871 aa17.1■□□□□ 0.33
CCDC28A-201ENST00000332797 XIRP2A4UGR9 3374 aa17.1■□□□□ 0.33
CCDC28A-201ENST00000332797 IKBKBO14920 756 aa17.1■□□□□ 0.33
CCDC28A-201ENST00000332797 ADAM12O43184 909 aa17.1■□□□□ 0.33
CCDC28A-201ENST00000332797 GLUD1P00367 558 aa17.1■□□□□ 0.33
CCDC28A-201ENST00000332797 CST3P01034 146 aaPredicted RBP17.1■□□□□ 0.33
CCDC28A-201ENST00000332797 C4BPAP04003 597 aaKnown RBP17.1■□□□□ 0.33
CCDC28A-201ENST00000332797 TYMPP19971 482 aa17.1■□□□□ 0.33
CCDC28A-201ENST00000332797 OR1D2P34982 312 aa17.1■□□□□ 0.33
CCDC28A-201ENST00000332797 ENPEPQ07075 957 aa17.1■□□□□ 0.33
CCDC28A-201ENST00000332797 MRPL58Q14197 206 aaKnown RBP17.1■□□□□ 0.33
CCDC28A-201ENST00000332797 CLUL1Q15846 466 aa17.1■□□□□ 0.33
CCDC28A-201ENST00000332797 CCDC40Q4G0X9 1142 aa17.1■□□□□ 0.33
CCDC28A-201ENST00000332797 DCAF17Q5H9S7 520 aaPredicted RBP17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms