RNA–Protein interactions for RNA: ENST00000327028.8

VIPAS39-201, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5 BASIC

Gene VIPAS39, Length 2,614 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-201ENST00000327028 BCO2Q9BYV7 579 aa10.99□□□□□ -0.65
VIPAS39-201ENST00000327028 KANSL3Q9P2N6 904 aa10.99□□□□□ -0.65
VIPAS39-201ENST00000327028 SERPING1P05155 500 aa10.99□□□□□ -0.65
VIPAS39-201ENST00000327028 PNMA6AP0CW24 399 aaPredicted RBP10.99□□□□□ -0.65
VIPAS39-201ENST00000327028 SKILP12757 684 aa10.99□□□□□ -0.65
VIPAS39-201ENST00000327028 ACO1P21399 889 aaKnown RBP10.99□□□□□ -0.65
VIPAS39-201ENST00000327028 RPL9P32969 192 aaKnown RBP10.99□□□□□ -0.65
VIPAS39-201ENST00000327028 FPGSQ05932 587 aa10.99□□□□□ -0.65
VIPAS39-201ENST00000327028 FAM71AQ8IYT1 594 aa10.99□□□□□ -0.65
VIPAS39-201ENST00000327028 FAM124BQ9H5Z6 455 aaPredicted RBP10.99□□□□□ -0.65
VIPAS39-201ENST00000327028 POLIQ9UNA4 740 aa10.99□□□□□ -0.65
VIPAS39-201ENST00000327028 FNDC1Q4ZHG4 1894 aaPredicted RBP10.99□□□□□ -0.65
VIPAS39-201ENST00000327028 FOXN3O00409 490 aaPredicted RBP10.98□□□□□ -0.65
VIPAS39-201ENST00000327028 PODXLO00592 558 aa10.98□□□□□ -0.65
VIPAS39-201ENST00000327028 GFPT2O94808 682 aa10.98□□□□□ -0.65
VIPAS39-201ENST00000327028 PRKCIP41743 596 aa10.98□□□□□ -0.65
VIPAS39-201ENST00000327028 TAF6P49848 677 aa10.98□□□□□ -0.65
VIPAS39-201ENST00000327028 YWHAEP62258 255 aaKnown RBP10.98□□□□□ -0.65
VIPAS39-201ENST00000327028 TNNC1P63316 161 aa10.98□□□□□ -0.65
VIPAS39-201ENST00000327028 WDR72Q3MJ13 1102 aa10.98□□□□□ -0.65
VIPAS39-201ENST00000327028 SV2CQ496J9 727 aa10.98□□□□□ -0.65
VIPAS39-201ENST00000327028 HGSNATQ68CP4 663 aa10.98□□□□□ -0.65
VIPAS39-201ENST00000327028 SCARA5Q6ZMJ2 495 aa10.98□□□□□ -0.65
VIPAS39-201ENST00000327028 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.98□□□□□ -0.65
VIPAS39-201ENST00000327028 IRF2BP2Q7Z5L9 587 aa10.98□□□□□ -0.65
VIPAS39-201ENST00000327028 ABI1Q8IZP0 508 aa10.98□□□□□ -0.65
VIPAS39-201ENST00000327028 BADQ92934 168 aa10.98□□□□□ -0.65
VIPAS39-201ENST00000327028 DDX27Q96GQ7 796 aaKnown RBP10.98□□□□□ -0.65
VIPAS39-201ENST00000327028 CASD1Q96PB1 797 aa10.98□□□□□ -0.65
VIPAS39-201ENST00000327028 CYP3A43Q9HB55 503 aa10.98□□□□□ -0.65
VIPAS39-201ENST00000327028 NXF1Q9UBU9 619 aaKnown RBP10.98□□□□□ -0.65
VIPAS39-201ENST00000327028 COL4A6Q14031 1691 aa10.98□□□□□ -0.65
VIPAS39-201ENST00000327028 ARHGAP6O43182 974 aa10.98□□□□□ -0.65
VIPAS39-201ENST00000327028 EVI5O60447 810 aa10.98□□□□□ -0.65
VIPAS39-201ENST00000327028 AMHP03971 560 aa10.98□□□□□ -0.65
VIPAS39-201ENST00000327028 CCDC172P0C7W6 258 aa10.98□□□□□ -0.65
VIPAS39-201ENST00000327028 DSC1Q08554 894 aa10.98□□□□□ -0.65
VIPAS39-201ENST00000327028 MRPL9Q9BYD2 267 aaKnown RBP10.98□□□□□ -0.65
VIPAS39-201ENST00000327028 SMYD3Q9H7B4 428 aa10.98□□□□□ -0.65
VIPAS39-201ENST00000327028 TBC1D13Q9NVG8 400 aa10.98□□□□□ -0.65
VIPAS39-201ENST00000327028 CNTN6Q9UQ52 1028 aa10.98□□□□□ -0.65
VIPAS39-201ENST00000327028 ACRP10323 421 aa10.97□□□□□ -0.65
VIPAS39-201ENST00000327028 WDR5P61964 334 aaKnown RBP10.97□□□□□ -0.65
VIPAS39-201ENST00000327028 ARID5AQ03989 594 aa10.97□□□□□ -0.65
VIPAS39-201ENST00000327028 KLHL30Q0D2K2 578 aa10.97□□□□□ -0.65
VIPAS39-201ENST00000327028 GPIHBP1Q8IV16 184 aa10.97□□□□□ -0.65
VIPAS39-201ENST00000327028 CHP1Q99653 195 aa10.97□□□□□ -0.65
VIPAS39-201ENST00000327028 GDAP2Q9NXN4 497 aa10.97□□□□□ -0.65
VIPAS39-201ENST00000327028 ARHGAP20Q9P2F6 1191 aa10.97□□□□□ -0.65
VIPAS39-201ENST00000327028 BZW2Q9Y6E2 419 aaKnown RBP10.97□□□□□ -0.65
VIPAS39-201ENST00000327028 CASTOR2A6NHX0 329 aa10.97□□□□□ -0.65
VIPAS39-201ENST00000327028 SOWAHDA6NJG2 315 aa10.97□□□□□ -0.65
VIPAS39-201ENST00000327028 KPNA7A9QM74 516 aa10.97□□□□□ -0.65
VIPAS39-201ENST00000327028 SPTLC1O15269 473 aa10.97□□□□□ -0.65
VIPAS39-201ENST00000327028 KRT5P13647 590 aa10.97□□□□□ -0.65
VIPAS39-201ENST00000327028 PAX3P23760 479 aa10.97□□□□□ -0.65
VIPAS39-201ENST00000327028 GATMP50440 423 aa10.97□□□□□ -0.65
VIPAS39-201ENST00000327028 CLCNKBP51801 687 aa10.97□□□□□ -0.65
VIPAS39-201ENST00000327028 MAPK8IP2Q13387 824 aaPredicted RBP10.97□□□□□ -0.65
VIPAS39-201ENST00000327028 UPP1Q16831 310 aa10.97□□□□□ -0.65
VIPAS39-201ENST00000327028 TDRD12Q587J7 1177 aaKnown RBP10.97□□□□□ -0.65
VIPAS39-201ENST00000327028 TTC39CQ8N584 583 aa10.97□□□□□ -0.65
VIPAS39-201ENST00000327028 SDCBP2Q9H190 292 aa10.97□□□□□ -0.65
VIPAS39-201ENST00000327028 CISHQ9NSE2 258 aa10.97□□□□□ -0.65
VIPAS39-201ENST00000327028 ZKSCAN5Q9Y2L8 839 aa10.97□□□□□ -0.65
VIPAS39-201ENST00000327028 PCDHB4Q9Y5E5 795 aa10.97□□□□□ -0.65
VIPAS39-201ENST00000327028 PTPRSQ13332 1948 aa10.97□□□□□ -0.65
VIPAS39-201ENST00000327028 SSU72P8A0A1W2PR75 194 aa10.96□□□□□ -0.65
VIPAS39-201ENST00000327028 CCDC85CA6NKD9 419 aa10.96□□□□□ -0.65
VIPAS39-201ENST00000327028 WEE2P0C1S8 567 aa10.96□□□□□ -0.65
VIPAS39-201ENST00000327028 ANXA13P27216 316 aa10.96□□□□□ -0.65
VIPAS39-201ENST00000327028 USP8P40818 1118 aa10.96□□□□□ -0.65
VIPAS39-201ENST00000327028 RAP1GAPP47736 663 aa10.96□□□□□ -0.65
VIPAS39-201ENST00000327028 KCNJ6P48051 423 aa10.96□□□□□ -0.65
VIPAS39-201ENST00000327028 ZNF132P52740 706 aa10.96□□□□□ -0.65
VIPAS39-201ENST00000327028 RNASELQ05823 741 aaKnown RBP10.96□□□□□ -0.65
VIPAS39-201ENST00000327028 PSRC1Q6PGN9 363 aaPredicted RBP10.96□□□□□ -0.65
VIPAS39-201ENST00000327028 CCDC170Q8IYT3 715 aa10.96□□□□□ -0.65
VIPAS39-201ENST00000327028 RBBP8NLQ8NC74 664 aaPredicted RBP10.96□□□□□ -0.65
VIPAS39-201ENST00000327028 NHEJ1Q9H9Q4 299 aaPredicted RBP10.96□□□□□ -0.65
VIPAS39-201ENST00000327028 PCDH10Q9P2E7 1040 aa10.96□□□□□ -0.65
VIPAS39-201ENST00000327028 CACNG4Q9UBN1 327 aa10.96□□□□□ -0.65
VIPAS39-201ENST00000327028 SNX9Q9Y5X1 595 aa10.96□□□□□ -0.65
VIPAS39-201ENST00000327028 CYP26A1O43174 497 aa10.96□□□□□ -0.66
VIPAS39-201ENST00000327028 B4GALT3O60512 393 aa10.96□□□□□ -0.66
VIPAS39-201ENST00000327028 DDHD2O94830 711 aa10.96□□□□□ -0.66
VIPAS39-201ENST00000327028 PLEKP08567 350 aaPredicted RBP10.96□□□□□ -0.66
VIPAS39-201ENST00000327028 CD58P19256 250 aa10.96□□□□□ -0.66
VIPAS39-201ENST00000327028 AARSP49588 968 aaKnown RBP eCLIP10.96□□□□□ -0.66
VIPAS39-201ENST00000327028 LILRA4P59901 499 aa10.96□□□□□ -0.66
VIPAS39-201ENST00000327028 INCA1Q0VD86 236 aa10.96□□□□□ -0.66
VIPAS39-201ENST00000327028 TMEM270Q6UE05 265 aa10.96□□□□□ -0.66
VIPAS39-201ENST00000327028 RAD9BQ6WBX8 426 aa10.96□□□□□ -0.66
VIPAS39-201ENST00000327028 C16orf59Q7L2K0 433 aa10.96□□□□□ -0.66
VIPAS39-201ENST00000327028 LIMS2Q7Z4I7 341 aa10.96□□□□□ -0.66
VIPAS39-201ENST00000327028 ZNF280BQ86YH2 543 aa10.96□□□□□ -0.66
VIPAS39-201ENST00000327028 COLGALT2Q8IYK4 626 aa10.96□□□□□ -0.66
VIPAS39-201ENST00000327028 LRRC43Q8N309 656 aa10.96□□□□□ -0.66
VIPAS39-201ENST00000327028 TOP1MTQ969P6 601 aa10.96□□□□□ -0.66
VIPAS39-201ENST00000327028 MMS19Q96T76 1030 aa10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms