RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 DDIASQ8IXT1 998 aa13.48□□□□□ -0.25
COL3A1-201ENST00000304636 ZBTB10Q96DT7 871 aa13.48□□□□□ -0.25
COL3A1-201ENST00000304636 CLMNQ96JQ2 1002 aa13.48□□□□□ -0.25
COL3A1-201ENST00000304636 ASCC2Q9H1I8 757 aaPredicted RBP13.48□□□□□ -0.25
COL3A1-201ENST00000304636 AIPL1Q9NZN9 384 aa13.48□□□□□ -0.25
COL3A1-201ENST00000304636 FLT1P17948 1338 aa13.48□□□□□ -0.25
COL3A1-201ENST00000304636 H0Y626 953 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 AIM2O14862 343 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 TRIM16O95361 564 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 RASA1P20936 1047 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 ABCE1P61221 599 aaKnown RBP13.47□□□□□ -0.25
COL3A1-201ENST00000304636 PRAMEP78395 509 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 PRUNE1Q86TP1 453 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 ASPSCR1Q9BZE9 553 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 FBXO40Q9UH90 709 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 MAD2L2Q9UI95 211 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 ZNF229Q9UJW7 825 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 F8W8V4 182 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 PSTPIP1O43586 416 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 CPA2P48052 419 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 ACAD10Q6JQN1 1059 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 C4orf22Q6V702 233 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 MSL3Q8N5Y2 521 aaKnown RBP13.47□□□□□ -0.25
COL3A1-201ENST00000304636 TDRD3Q9H7E2 651 aaKnown RBP13.47□□□□□ -0.25
COL3A1-201ENST00000304636 RSAD1Q9HA92 442 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 RNF146Q9NTX7 359 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 DGAT1O75907 488 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 FLOT2Q14254 428 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 IMPG1Q17R60 797 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 FOXR1Q6PIV2 292 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 FBXO25Q8TCJ0 367 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 UBE2Q2LH0YL09 131 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 SYCP2LQ5T4T6 812 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 GALNT4Q8N4A0 578 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 DDI1Q8WTU0 396 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 MASTLQ96GX5 879 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 CDYLQ9Y232 598 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 USP32Q8NFA0 1604 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 ATP9BO43861 1147 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 CALB2P22676 271 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 KYAT1Q16773 422 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 UGP2Q16851 508 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 SNRNP48Q6IEG0 339 aaKnown RBP13.47□□□□□ -0.25
COL3A1-201ENST00000304636 LDHDQ86WU2 507 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 RNF135Q8IUD6 432 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 ARID3BQ8IVW6 561 aaPredicted RBP13.47□□□□□ -0.25
COL3A1-201ENST00000304636 FEZF2Q8TBJ5 459 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 ADNPQ9H2P0 1102 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 CDC42EP4Q9H3Q1 356 aaKnown RBP13.47□□□□□ -0.25
COL3A1-201ENST00000304636 GDF3Q9NR23 364 aa13.47□□□□□ -0.25
COL3A1-201ENST00000304636 HSPA1AP0DMV8 641 aaKnown RBP13.46□□□□□ -0.25
COL3A1-201ENST00000304636 HSPA1BP0DMV9 641 aaKnown RBP13.46□□□□□ -0.25
COL3A1-201ENST00000304636 FDX1P10109 184 aa13.46□□□□□ -0.25
COL3A1-201ENST00000304636 XPAP23025 273 aaPredicted RBP13.46□□□□□ -0.25
COL3A1-201ENST00000304636 NFX1Q12986 1120 aaKnown RBP13.46□□□□□ -0.25
COL3A1-201ENST00000304636 STILQ15468 1287 aa13.46□□□□□ -0.25
COL3A1-201ENST00000304636 SMAD1Q15797 465 aaKnown RBP13.46□□□□□ -0.25
COL3A1-201ENST00000304636 ZNF34Q8IZ26 560 aa13.46□□□□□ -0.25
COL3A1-201ENST00000304636 PPP1R36Q96LQ0 422 aa13.46□□□□□ -0.25
COL3A1-201ENST00000304636 AP5M1Q9H0R1 490 aa13.46□□□□□ -0.25
COL3A1-201ENST00000304636 BLOC1S6Q9UL45 172 aa13.46□□□□□ -0.25
COL3A1-201ENST00000304636 DAB1O75553 588 aa13.46□□□□□ -0.25
COL3A1-201ENST00000304636 MYL2P10916 166 aa13.46□□□□□ -0.25
COL3A1-201ENST00000304636 PDGFRAP16234 1089 aa13.46□□□□□ -0.25
COL3A1-201ENST00000304636 PTPN4P29074 926 aa13.46□□□□□ -0.25
COL3A1-201ENST00000304636 SPRP35270 261 aaPredicted RBP13.46□□□□□ -0.25
COL3A1-201ENST00000304636 TRPC1P48995 793 aa13.46□□□□□ -0.25
COL3A1-201ENST00000304636 GPSM2P81274 684 aa13.46□□□□□ -0.25
COL3A1-201ENST00000304636 NCOA4Q13772 614 aa13.46□□□□□ -0.25
COL3A1-201ENST00000304636 ADRM1Q16186 407 aa13.46□□□□□ -0.25
COL3A1-201ENST00000304636 NTRK3Q16288 839 aa13.46□□□□□ -0.25
COL3A1-201ENST00000304636 EAPPQ56P03 285 aaPredicted RBP13.46□□□□□ -0.25
COL3A1-201ENST00000304636 CATSPER3Q86XQ3 398 aa13.46□□□□□ -0.25
COL3A1-201ENST00000304636 NDUFAF2Q8N183 169 aa13.46□□□□□ -0.25
COL3A1-201ENST00000304636 ZNF555Q8NEP9 628 aa13.46□□□□□ -0.25
COL3A1-201ENST00000304636 C20orf96Q9NUD7 363 aaPredicted RBP13.46□□□□□ -0.25
COL3A1-201ENST00000304636 SRP72O76094 671 aaKnown RBP13.46□□□□□ -0.25
COL3A1-201ENST00000304636 OVGP1Q12889 678 aa13.46□□□□□ -0.25
COL3A1-201ENST00000304636 SGSM1Q2NKQ1 1148 aa13.46□□□□□ -0.25
COL3A1-201ENST00000304636 ANGPTL8Q6UXH0 198 aa13.46□□□□□ -0.25
COL3A1-201ENST00000304636 PCYOX1LQ8NBM8 494 aa13.46□□□□□ -0.25
COL3A1-201ENST00000304636 OR9Q1Q8NGQ5 310 aa13.46□□□□□ -0.25
COL3A1-201ENST00000304636 SPATA18Q8TC71 538 aa13.46□□□□□ -0.25
COL3A1-201ENST00000304636 FRMD8P1Q9BZ68 369 aaPredicted RBP13.46□□□□□ -0.25
COL3A1-201ENST00000304636 DTNAQ9Y4J8 743 aa13.46□□□□□ -0.25
COL3A1-201ENST00000304636 CST8O60676 142 aa13.46□□□□□ -0.26
COL3A1-201ENST00000304636 PTENP60484 403 aa13.46□□□□□ -0.26
COL3A1-201ENST00000304636 HOXC10Q9NYD6 342 aa13.46□□□□□ -0.26
COL3A1-201ENST00000304636 CPS1P31327 1500 aa13.46□□□□□ -0.26
COL3A1-201ENST00000304636 FRMPD1Q5SYB0 1578 aa13.45□□□□□ -0.26
COL3A1-201ENST00000304636 RPS6KA5O75582 802 aa13.45□□□□□ -0.26
COL3A1-201ENST00000304636 CYP11B2P19099 503 aa13.45□□□□□ -0.26
COL3A1-201ENST00000304636 PSMD7P51665 324 aa13.45□□□□□ -0.26
COL3A1-201ENST00000304636 YTHDF3Q7Z739 585 aaKnown RBP13.45□□□□□ -0.26
COL3A1-201ENST00000304636 VPS33BQ9H267 617 aa13.45□□□□□ -0.26
COL3A1-201ENST00000304636 ZC4H2Q9NQZ6 224 aa13.45□□□□□ -0.26
COL3A1-201ENST00000304636 NYAP2Q9P242 653 aa13.45□□□□□ -0.26
COL3A1-201ENST00000304636 WASHC2DQ5SRD0 308 aa13.45□□□□□ -0.26
COL3A1-201ENST00000304636 SCUBE1Q8IWY4 988 aa13.45□□□□□ -0.26
COL3A1-201ENST00000304636 ATXN2LQ8WWM7 1075 aaKnown RBP13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 101.7 ms