RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 A0A087X0T9 212 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 A0A0G2JND7 137 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 MYMKA6NI61 221 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 HAUS5O94927 633 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 GSNP06396 782 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 FAM228BP0C875 321 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 HSPA8P11142 646 aaKnown RBP6.73□□□□□ -1.33
VPS35-201ENST00000299138 GYS1P13807 737 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 ATF7P17544 494 aaPredicted RBP6.73□□□□□ -1.33
VPS35-201ENST00000299138 TECP42680 631 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 SH2D3CQ8N5H7 860 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 SPDYE1Q8NFV5 336 aaPredicted RBP6.73□□□□□ -1.33
VPS35-201ENST00000299138 EFHD2Q96C19 240 aaPredicted RBP6.73□□□□□ -1.33
VPS35-201ENST00000299138 MBOAT7Q96N66 472 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 ZNF317Q96PQ6 595 aaPredicted RBP6.73□□□□□ -1.33
VPS35-201ENST00000299138 SETDB2Q96T68 719 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 SMAD5Q99717 465 aaKnown RBP6.73□□□□□ -1.33
VPS35-201ENST00000299138 OSBPL7Q9BZF2 842 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 FAM124BQ9H5Z6 455 aaPredicted RBP6.73□□□□□ -1.33
VPS35-201ENST00000299138 PSTPIP2Q9H939 334 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 ETAA1Q9NY74 926 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 RGL1Q9NZL6 768 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 M0R2N6 131 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 ZBTB5O15062 677 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 PSTPIP1O43586 416 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 ANP32DO95626 131 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 KITP10721 976 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 KCNA3P22001 575 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 PAPOLAP51003 745 aaKnown RBP6.73□□□□□ -1.33
VPS35-201ENST00000299138 SDE2Q6IQ49 451 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 RAB44Q7Z6P3 723 aaPredicted RBP6.73□□□□□ -1.33
VPS35-201ENST00000299138 STX19Q8N4C7 294 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 RBBP8NLQ8NC74 664 aaPredicted RBP6.73□□□□□ -1.33
VPS35-201ENST00000299138 WWP1Q9H0M0 922 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 BLOC1S4Q9NUP1 217 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 DDX56Q9NY93 547 aaKnown RBP6.73□□□□□ -1.33
VPS35-201ENST00000299138 USP20Q9Y2K6 914 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 LRRC42Q9Y546 428 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 XPOTO43592 962 aaKnown RBP6.73□□□□□ -1.33
VPS35-201ENST00000299138 GALCP54803 685 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 MYL7Q01449 175 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 PTK6Q13882 451 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 DRICH1Q6PGQ1 229 aaPredicted RBP6.73□□□□□ -1.33
VPS35-201ENST00000299138 C16orf86Q6ZW13 317 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 SZRD1Q7Z422 152 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 RASSF3Q86WH2 238 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 RDM1Q8NG50 284 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 TINF2Q9BSI4 451 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 PARVGQ9HBI0 331 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 SENP2Q9HC62 589 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 CYP39A1Q9NYL5 469 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 APEX2Q9UBZ4 518 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 ANAPC5Q9UJX4 755 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 KLHL20Q9Y2M5 609 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 SNPHO15079 494 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 ECE2O60344 883 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 SERPINB8P50452 374 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 POLGP54098 1239 aaPredicted RBP6.72□□□□□ -1.33
VPS35-201ENST00000299138 EPHB1P54762 984 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 PSMC6P62333 389 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 ARF5P84085 180 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 DDHD1Q8NEL9 900 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 SLC26A7Q8TE54 656 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 JDP2Q8WYK2 163 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 ABHD8Q96I13 439 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 FAM161BQ96MY7 647 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 PDCD10Q9BUL8 212 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 SMARCAD1Q9H4L7 1026 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 USE1Q9NZ43 259 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 TJP1Q07157 1748 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 FDX1P10109 184 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 IMPDH2P12268 514 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 POLR2BP30876 1174 aaKnown RBP6.72□□□□□ -1.33
VPS35-201ENST00000299138 RPS6P62753 249 aaKnown RBP6.72□□□□□ -1.33
VPS35-201ENST00000299138 SLC7A5Q01650 507 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 AP1B1Q10567 949 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 ARHGAP17Q68EM7 881 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 SETD3Q86TU7 594 aaPredicted RBP6.72□□□□□ -1.33
VPS35-201ENST00000299138 ANKRD13CQ8N6S4 541 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 ATP11CQ8NB49 1132 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 DDI1Q8WTU0 396 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 ACCSQ96QU6 501 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 EHD4Q9H223 541 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 CCNL1Q9UK58 526 aaPredicted RBP6.72□□□□□ -1.33
VPS35-201ENST00000299138 GAKO14976 1311 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 C2CD2LO14523 706 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 CIITAP33076 1130 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 PTK2Q05397 1052 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 CCNG2Q16589 344 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 ARL13BQ3SXY8 428 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 SGO2Q562F6 1265 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 RC3H1Q5TC82 1133 aaKnown RBP6.72□□□□□ -1.33
VPS35-201ENST00000299138 CCDC137Q6PK04 289 aaKnown RBP6.72□□□□□ -1.33
VPS35-201ENST00000299138 PI16Q6UXB8 463 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 FGD2Q7Z6J4 655 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 KRT77Q7Z794 578 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 PALB2Q86YC2 1186 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 FAM178BQ8IXR5 827 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 LRRC34Q8IZ02 419 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 KIAA0895Q8NCT3 520 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms