RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 GPAT2Q6NUI2 795 aa18.15■□□□□ 0.5
SHANK1-201ENST00000293441 TBC1D19Q8N5T2 526 aa18.15■□□□□ 0.5
SHANK1-201ENST00000293441 BHMTQ93088 406 aa18.15■□□□□ 0.5
SHANK1-201ENST00000293441 LMNAP02545 664 aaKnown RBP18.15■□□□□ 0.5
SHANK1-201ENST00000293441 NCAM1P13591 858 aa18.15■□□□□ 0.5
SHANK1-201ENST00000293441 SMTNL2Q2TAL5 461 aa18.15■□□□□ 0.5
SHANK1-201ENST00000293441 CYP4A22Q5TCH4 519 aa18.15■□□□□ 0.5
SHANK1-201ENST00000293441 C9orf131Q5VYM1 1079 aa18.15■□□□□ 0.5
SHANK1-201ENST00000293441 LRRC8EQ6NSJ5 796 aa18.15■□□□□ 0.5
SHANK1-201ENST00000293441 CATSPERBQ9H7T0 1116 aa18.15■□□□□ 0.5
SHANK1-201ENST00000293441 NIPSNAP3AQ9UFN0 247 aaPredicted RBP18.15■□□□□ 0.5
SHANK1-201ENST00000293441 ACADSBP45954 432 aa18.15■□□□□ 0.5
SHANK1-201ENST00000293441 ALDH7A1P49419 539 aaKnown RBP18.15■□□□□ 0.5
SHANK1-201ENST00000293441 MKRN4PQ13434 485 aaPredicted RBP18.15■□□□□ 0.5
SHANK1-201ENST00000293441 ARHGEF26Q96DR7 871 aa18.15■□□□□ 0.5
SHANK1-201ENST00000293441 SPDYE5A6NIY4 337 aa18.15■□□□□ 0.5
SHANK1-201ENST00000293441 ATMINO43313 823 aaPredicted RBP18.15■□□□□ 0.5
SHANK1-201ENST00000293441 SRGNP10124 158 aa18.15■□□□□ 0.5
SHANK1-201ENST00000293441 BRD2P25440 801 aaKnown RBP18.15■□□□□ 0.5
SHANK1-201ENST00000293441 SPDYE7PQ495Y7 208 aa18.15■□□□□ 0.5
SHANK1-201ENST00000293441 GLRA4Q5JXX5 417 aa18.15■□□□□ 0.5
SHANK1-201ENST00000293441 DEFB132Q7Z7B7 95 aa18.15■□□□□ 0.5
SHANK1-201ENST00000293441 MTBPQ96DY7 904 aa18.15■□□□□ 0.5
SHANK1-201ENST00000293441 TARS2Q9BW92 718 aaKnown RBP18.15■□□□□ 0.5
SHANK1-201ENST00000293441 AGPAT5Q9NUQ2 364 aa18.15■□□□□ 0.5
SHANK1-201ENST00000293441 UVRAGQ9P2Y5 699 aa18.15■□□□□ 0.5
SHANK1-201ENST00000293441 PAN2Q504Q3 1202 aaKnown RBP18.14■□□□□ 0.5
SHANK1-201ENST00000293441 CATSPER3Q86XQ3 398 aa18.14■□□□□ 0.5
SHANK1-201ENST00000293441 PTPRN2Q92932 1015 aa18.14■□□□□ 0.5
SHANK1-201ENST00000293441 FAM118BQ9BPY3 351 aa18.14■□□□□ 0.5
SHANK1-201ENST00000293441 AP3B1O00203 1094 aa18.14■□□□□ 0.49
SHANK1-201ENST00000293441 ANTXR2P58335 489 aa18.14■□□□□ 0.49
SHANK1-201ENST00000293441 SCFD1Q8WVM8 642 aa18.14■□□□□ 0.49
SHANK1-201ENST00000293441 OTULINQ96BN8 352 aa18.14■□□□□ 0.49
SHANK1-201ENST00000293441 EIF3DO15371 548 aaKnown RBP eCLIP18.14■□□□□ 0.49
SHANK1-201ENST00000293441 PPP3CCP48454 512 aa18.14■□□□□ 0.49
SHANK1-201ENST00000293441 MTHFD1LQ6UB35 978 aa18.14■□□□□ 0.49
SHANK1-201ENST00000293441 RRM2BQ7LG56 351 aa18.14■□□□□ 0.49
SHANK1-201ENST00000293441 SEZ6Q53EL9 994 aa18.14■□□□□ 0.49
SHANK1-201ENST00000293441 TAGAPQ8N103 731 aa18.14■□□□□ 0.49
SHANK1-201ENST00000293441 ICAM1P05362 532 aa18.14■□□□□ 0.49
SHANK1-201ENST00000293441 ARHGAP15Q53QZ3 475 aa18.14■□□□□ 0.49
SHANK1-201ENST00000293441 PRMT6Q96LA8 375 aaPredicted RBP18.14■□□□□ 0.49
SHANK1-201ENST00000293441 MEI1Q5TIA1 1274 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 TDRD10Q5VZ19 366 aaKnown RBP18.13■□□□□ 0.49
SHANK1-201ENST00000293441 RFX8Q6ZV50 586 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 ATP5HO75947 161 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 SLC9A1P19634 815 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 GPD1P21695 349 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 FAM161BQ96MY7 647 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 RNF103-CHMP3A0A140T963 221 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 E2F8A0AVK6 867 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 GMNCA6NCL1 334 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 KLK7P49862 253 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 INTS5Q6P9B9 1019 aaKnown RBP18.13■□□□□ 0.49
SHANK1-201ENST00000293441 CCDC90BQ9GZT6 254 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 DPP3Q9NY33 737 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 POLLQ9UGP5 575 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 PHF2O75151 1096 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 PGK2P07205 417 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 FAM200BP0CF97 657 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 RPA1P27694 616 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 CHSY1Q86X52 802 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 COL23A1Q86Y22 540 aaPredicted RBP18.13■□□□□ 0.49
SHANK1-201ENST00000293441 MEFVO15553 781 aaPredicted RBP18.13■□□□□ 0.49
SHANK1-201ENST00000293441 EPC2Q52LR7 807 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 ZC3H12BQ5HYM0 836 aaKnown RBP18.13■□□□□ 0.49
SHANK1-201ENST00000293441 HS6ST3Q8IZP7 471 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 SPATA4Q8NEY3 305 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 IPMKQ8NFU5 416 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 NAF1Q96HR8 494 aaKnown RBP18.13■□□□□ 0.49
SHANK1-201ENST00000293441 SRPK1Q96SB4 655 aaKnown RBP18.13■□□□□ 0.49
SHANK1-201ENST00000293441 LATS2Q9NRM7 1088 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 CHCHD3Q9NX63 227 aaKnown RBP18.13■□□□□ 0.49
SHANK1-201ENST00000293441 ZDHHC9Q9Y397 364 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 PKP3Q9Y446 797 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 PXDNLA1KZ92 1463 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 ODC1P11926 461 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 CAP2P40123 477 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 MDH1BQ5I0G3 518 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 PKN3Q6P5Z2 889 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 TRIM51Q9BSJ1 452 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 RUBCNLQ9H714 662 aa18.13■□□□□ 0.49
SHANK1-201ENST00000293441 USP10Q14694 798 aaKnown RBP18.12■□□□□ 0.49
SHANK1-201ENST00000293441 SYDE1Q6ZW31 735 aaPredicted RBP18.12■□□□□ 0.49
SHANK1-201ENST00000293441 SLITRK1Q96PX8 696 aa18.12■□□□□ 0.49
SHANK1-201ENST00000293441 ANKEF1Q9NU02 776 aa18.12■□□□□ 0.49
SHANK1-201ENST00000293441 TAF6P49848 677 aa18.12■□□□□ 0.49
SHANK1-201ENST00000293441 ST13P4Q8IZP2 240 aaPredicted RBP18.12■□□□□ 0.49
SHANK1-201ENST00000293441 VGLL3A8MV65 326 aa18.12■□□□□ 0.49
SHANK1-201ENST00000293441 DDX5P17844 614 aaKnown RBP18.12■□□□□ 0.49
SHANK1-201ENST00000293441 CUL3Q13618 768 aa18.12■□□□□ 0.49
SHANK1-201ENST00000293441 PLEKHH3Q7Z736 793 aa18.12■□□□□ 0.49
SHANK1-201ENST00000293441 ACER1Q8TDN7 264 aa18.12■□□□□ 0.49
SHANK1-201ENST00000293441 ADARB2Q9NS39 739 aaKnown RBP18.12■□□□□ 0.49
SHANK1-201ENST00000293441 C20orf96Q9NUD7 363 aaPredicted RBP18.12■□□□□ 0.49
SHANK1-201ENST00000293441 ZC3H7BQ9UGR2 993 aaKnown RBP18.12■□□□□ 0.49
SHANK1-201ENST00000293441 MRFAP1Q9Y605 127 aa18.12■□□□□ 0.49
SHANK1-201ENST00000293441 GPRASP2Q96D09 838 aa18.12■□□□□ 0.49
SHANK1-201ENST00000293441 ZCWPW1Q9H0M4 648 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms